BLUPs: Best Linear Unbiased Predictors for 21 phenotypes from the...

In Alice-MacQueen/CDBNgenomics: Genomics Using the Cooperative Dry Bean Nursery Dataset

Description

A dataset containing best linear unbiased predictors (BLUPs) for 21 phenotypes from the Cooperative Dry Bean Nursery (CDBN) diversity panel of 347 genotypes of Phaseolus vulgaris, 327 of which were phenotyped. BLUPs were derived for CDBN phenotypes using rrBLUP, and conditioning on a kinship matrix, the location the phenotype came from, and the location by year combination that the phenotype came from. The variables are as follows:

Usage

data(BLUPs)

Format

A data frame with 327 rows and 31 variables

Details

• Taxa. Taxa ID of the Phaseolus vulgaris CDBN panel.

• Seq_ID. The ID of the sequenced line in the CDBN panel.

• GHmode. Mode of the growth habit scored in the CDBN.

• CDBN_ID. ID of the CDBN entry

• Gene_pool. Whether the CDBN entry came from the Mesoamerican or Andean gene pool.

• Race. The race of the CDBN entry: Durango, Jalisco, Mesoamerican, or Nueva Granada.

• Market_class_ahm. Market class of the CDBN entry

• Det_scr. Whether or not the CDBN entry was determinate

• Earliest_Year_CDBN. The earliest year the entry was grown in the CDBN.

• BM. BLUPs for biomass in kg

• BR. BLUPs for whether or not the entry had a blackroot BCMV response

• CB. BLUPs for common bacterial blight damage score

• CM. BLUPs for BCMV (bean common mosaic virus) damage score

• CT. BLUPs for curly top virus presence/absence

• DF. BLUPs for days to flowering

• DM. BLUPs for days to maturity

• EV. BLUPs for early vigor score

• GH. BLUPs for growth habit, on a 1-3 scale

• HB. BLUPs for halo blight damage score

• HI. BLUPs for harvest index (

• LG. BLUPs for lodging score

• PH. BLUPs for plant height, in cm

• RR. BLUPs for root rot damage score

• RU. BLUPs for rust damage score

• SA. BLUPs for seed appearance score

• SF. BLUPs for the duration of seed fill, in days.

• SW. BLUPs for seed weight, in mg.

• SY. BLUPs for seed yield, in kg per ha.

• WM. BLUPs for white mold damage score

• ZN. BLUPs for zinc deficiency damage score

Author(s)

Alice MacQueen [e-mail]

References

data_blah.com

Alice-MacQueen/CDBNgenomics documentation built on Aug. 18, 2020, 4:39 p.m.