get_top_effects_log10p: Step One of bigsnp2mashr
In Alice-MacQueen/CDBNgenomics: Genomics Using the Cooperative Dry Bean Nursery Dataset
View source: R/cdbn_bigsnp2mashr.R
Description
Step One of bigsnp2mashr
Usage
1
get_top_effects_log10p(path, gwas_rds, phenotype, numSNPs, markers)
Arguments
path
Path
gwas_rds
RDS file with gwas results
phenotype
Character vector. Single phenotype name
numSNPs
Integer. Number of top SNPs to choose.
markers
Marker CHR & POS for the GWAS you ran
Alice-MacQueen/CDBNgenomics documentation built on Aug. 18, 2020, 4:39 p.m.
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View source: R/cdbn_bigsnp2mashr.R
Description
Step One of bigsnp2mashr
Usage
1 | get_top_effects_log10p(path, gwas_rds, phenotype, numSNPs, markers)
|
Arguments
path |
Path |
gwas_rds |
RDS file with gwas results |
phenotype |
Character vector. Single phenotype name |
numSNPs |
Integer. Number of top SNPs to choose. |
markers |
Marker CHR & POS for the GWAS you ran |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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