Files in Alice-MacQueen/CDBNgenomics
Genomics Using the Cooperative Dry Bean Nursery Dataset

.Rbuildignore
.gitignore
.travis.yml
CDBNgenomics.Rproj
DESCRIPTION
NAMESPACE
R/GAPIT_PC_selection.R R/data.R
R/get_annotations.R
R/handle_mash_results.R R/mash_standard_run.R R/utils-pipe.R README.Rmd README.md
analysis-paper/BLUP_Descriptive_Statistics.csv
analysis-paper/BLUP_Descriptive_Statistics.xlsx
analysis-paper/BLUPs_analysis.Rmd analysis-paper/Make_GAPIT_TopSNP_Tables.R
analysis-paper/SNPs with significant effects in n conditions 2019-08-07 16.33.24.bmp
analysis-paper/SNPs with significant effects in n conditions 2019-08-07 16.34.04.bmp
analysis-paper/SNPs with significant effects in n conditions 2019-08-07 16.36.01.bmp
analysis-paper/SNPs with significant effects in n conditions 2019-08-07 16.36.43.bmp
analysis-paper/SNPs with significant effects in n conditions 2019-08-07 16.37.18.bmp
analysis-paper/SNPs with significant effects in n conditions 2019-08-07 16.37.53.bmp
analysis-paper/SNPs with significant effects in n conditions 2019-08-07 16.38.29.bmp
analysis-paper/SNPs with significant effects in n conditions 2019-08-07 16.39.28.bmp
analysis-paper/SNPs with significant effects in n conditions 2019-08-07 16.40.08.bmp
analysis-paper/SNPs with significant effects in n conditions 2019-08-07 16.42.40.bmp
analysis-paper/mash_22_phenotype_visualization_2019-07-08.Rmd
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analysis-paper/mash_figure_panel_a.svg
analysis-paper/mash_table_output_BFgt2_2019-07-09.csv
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data-raw/GAPIT.Kin.VanRaden.csv
data-raw/GAPIT.PCA.csv
data-raw/GAPIT.PCA.eigenvalues.csv
data-raw/GAPIT_Numerical_format_files/Numerical_format_GD_CDBN_001_359_pedigree_fillin_chr1.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GD_CDBN_001_359_pedigree_fillin_chr10.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GD_CDBN_001_359_pedigree_fillin_chr11.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GD_CDBN_001_359_pedigree_fillin_chr2.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GD_CDBN_001_359_pedigree_fillin_chr3.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GD_CDBN_001_359_pedigree_fillin_chr4.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GD_CDBN_001_359_pedigree_fillin_chr5.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GD_CDBN_001_359_pedigree_fillin_chr6.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GD_CDBN_001_359_pedigree_fillin_chr7.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GD_CDBN_001_359_pedigree_fillin_chr8.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GD_CDBN_001_359_pedigree_fillin_chr9.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GM_CDBN_001_359_pedigree_fillin_chr1.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GM_CDBN_001_359_pedigree_fillin_chr10.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GM_CDBN_001_359_pedigree_fillin_chr11.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GM_CDBN_001_359_pedigree_fillin_chr2.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GM_CDBN_001_359_pedigree_fillin_chr3.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GM_CDBN_001_359_pedigree_fillin_chr4.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GM_CDBN_001_359_pedigree_fillin_chr5.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GM_CDBN_001_359_pedigree_fillin_chr6.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GM_CDBN_001_359_pedigree_fillin_chr7.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GM_CDBN_001_359_pedigree_fillin_chr8.txt.gz
data-raw/GAPIT_Numerical_format_files/Numerical_format_GM_CDBN_001_359_pedigree_fillin_chr9.txt.gz
data-raw/Pairwise_sharing_Strong_Effects_4000SNPs.rds
data-raw/Pairwise_sharing_sign_Strong_Effects_4000SNPs.rds
data-raw/Strong_Effects4000SNPs.rds
data-raw/kinBLUP_phenotypedOnly_GAPIT_2019-02-26.txt
data-raw/metadata.R
data-raw/rsconnect/documents/CDBN_Phenotypes_cleanup_V2.0.Rmd/rpubs.com/rpubs/Document.dcf
data-raw/rsconnect/documents/CDBN_Phenotypes_cleanup_V2.0.Rmd/rpubs.com/rpubs/Publish Document.dcf
data/BLUPs.rda
data/metadata.rda
man/BLUPs.Rd
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man/gapit_model_selection.Rd man/gapit_results_in_filepath.Rd man/get_colnames.Rd man/get_log10bf.Rd man/get_marker_df.Rd man/get_n_significant_conditions.Rd man/get_ncond.Rd man/get_pairwise_sharing.Rd man/get_significant_results.Rd man/load_g2m_df.Rd man/mash_plot_effects.Rd man/mash_plot_manhattan_by_condition.Rd man/mash_plot_pairwise_sharing.Rd man/mash_plot_sig_by_condition.Rd man/mash_standard_run.Rd man/metadata.Rd man/pipe.Rd man/reorder_cormat.Rd
Alice-MacQueen/CDBNgenomics documentation built on Aug. 11, 2019, 4:22 p.m.