updateAndOrderClusters: Function for updating and ordering clusters based on...
In AllenInstitute/L5_VEN:

updateAndOrderClusters

R Documentation

Function for updating and ordering clusters based on meta-data

Description

See renameAndOrderClusters in library(scrattch.hicat)

Usage

updateAndOrderClusters(sampleInfo,
  classNameColumn = "cluster_type_label",
  layerNameColumn = "layer_label", matchNameColumn = "cellmap_label",
  regionNameColumn = "Region_label",
  newColorNameColumn = "cellmap_color", otherColumns = NULL,
  topGenes = NULL, classLevels = c("inh", "exc", "glia"),
  getLayer = function(x) return(as.numeric(substr(as.character(x), 2,
  2))), sep = "_")

AllenInstitute/L5_VEN documentation built on July 31, 2022, 6:32 p.m.