compare_annotate: Compare two sets of cluster assignments for the same set of...

In AllenInstitute/scrattch.hicat: Hierarchical Iterative Clustering Analysis for Transcriptomic data

Compare two sets of cluster assignments for the same set of cells

Description

Compare two sets of cluster assignments for the same set of cells

Usage

compare_annotate(
  cl,
  ref.cl,
  ref.cl.df = NULL,
  reorder = TRUE,
  rename = TRUE,
  do.droplevels = TRUE,
  min.th = 1
)

Arguments

cl	A cluster factor object to compare to a reference
ref.cl	A cluster factor object for the reference clusters
ref.cl.df	A data.frame with reference cluster annotations that includes a "cluster_label" column
reorder	Whether or not to reorder the overlaps by overlap size. Default = TRUE
rename	a logical indicating whether or not to rename the results.

Value

a list with 5 objects:

• cl

• cl.df

• g A ggplot2 dot plot object for the comparison.

• tb.df

• cl.id.map

AllenInstitute/scrattch.hicat documentation built on Oct. 20, 2023, 6:55 a.m.