de_score: Title

Description Usage Arguments Value

View source: R/de.genes.R

Description

Title

Usage

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de_score(norm.dat, cl, de.param = de_param(), method = "limma",
  de.genes = NULL, ...)

Arguments

norm.dat

log transformed normalized gene expression matrix

cl

Cluster membership.

de.param

DE gene criteria set by de_param function.

method

Default "limma".

de.genes

If DE genes already computed for some pairs of clusters, use them without recomputation.

min.cells

Minimal number of cells in a cluster

Value

a list with DE genes from all pairs of clusters.


AllenInstitute/scrattch.hicat documentation built on Nov. 6, 2018, 9:47 p.m.