de_stats_pair: Compute differential expression summary statistics based on a...

In AllenInstitute/scrattch.hicat: Hierarchical Iterative Clustering Analysis for Transcriptomic data

Compute differential expression summary statistics based on a differential results data.frame and de_param().

Description

Compute differential expression summary statistics based on a differential results data.frame and de_param().

Usage

de_stats_pair(
  df,
  de.param = de_param(),
  cl.size1 = NULL,
  cl.size2 = NULL,
  select.genes = NULL
)

Arguments

df	A data.frame of pairwise differential expression results (i.e. from score_selected_pairs()).
de.param	A list of differential gene expression parameters from de_param()
cl.size1	Optional: The number of samples in the first/high cluster
cl.size2	Optional: The number of samples in the second/low cluster

AllenInstitute/scrattch.hicat documentation built on Oct. 20, 2023, 6:55 a.m.