summary.interaction_table: Create summary of 'interaction_table'

In AlmaasLab/micInt: Find microbial interactions

Create summary of interaction_table

Description

Create summary of interaction_table

Usage

## S3 method for class 'interaction_table'
summary(object, ...)

Arguments

object	An interaction table returned from create_interaction_table
...	further arguments passed to or from other methods

Value

A list with the following fields (the first three are taken directly from the interaction.table):

• measure_name

• signed

• measure_type

• number_significant: The number of significant interactions

• proportion_negative: The proprotion of significant interactions which are negative

library(micInt) sim.scores <- similarity_measures(subset= c("spearman","pearson")) res <- runAnalysis(OTU_table = seawater,sim.scores = sim.scores, iterations = 100, parallel = FALSE) int_table <- res$similarity_measures_significance$spearman summary(int_table)

AlmaasLab/micInt documentation built on April 1, 2022, 10:37 a.m.