readPlate: Read in the sorter data with minimal processing

In AndersenLab/COPASutils: Tools for processing COPAS large-particle flow cytometer data

Description

Returns a minimally processed data frame, optionally with SVM-mediated bubble prediction.

Usage

readPlate(file, tofmin = 0, tofmax = 10000, extmin = 0, extmax = 10000,
  SVM = TRUE, reflx = TRUE)

Arguments

file	path to sorter data file
tofmin	minimum cut off for time of flight, defaults to 0
tofmax	maximum cut off for time of flight, defaults to 10000
extmin	minimum cut off for extinction, defaults to 0
extmax	maximum cut off for extinction, defaults to 10000
SVM	logical dictating whether to predict bubbles with the SVM
reflx	logical indicating whether ReFLx module was used (TRUE) or LP Sampler was used (FALSE), defaults to TRUE

AndersenLab/COPASutils documentation built on May 5, 2019, 4:57 a.m.