README.md
In AslaugL/thesisToolsOmics: Tools for analysing and plotting metabolomics data.
thesisToolsOmics
Scripts and pipelines used to analyse metabolomics in my master thesis in biology. Using a different metabolomics datasets found in Germain A, Ruppert D, Levine SM, Hanson MR. Prospective Biomarkers from Plasma Metabolomics of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome Implicate Redox Imbalance in Disease Symptomatology. Metabolites. 2018 Dec 6;8(4):90. doi: 10.3390/metabo8040090.
Run univariate tests
Run univariate tests using rstatix on metabolomics data, and plot volcanoplots and half violin/hlaf boxplots of interesting metabolites with ggplot2. Also count total carbons and double bonds of lipid species, and plot them in a heatmap with fold change value.
Run multivariate tests
Run PCA and OPLS, and plot the results using ggplot2.
AslaugL/thesisToolsOmics documentation built on April 3, 2022, 8:16 p.m.
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thesisToolsOmics
Scripts and pipelines used to analyse metabolomics in my master thesis in biology. Using a different metabolomics datasets found in Germain A, Ruppert D, Levine SM, Hanson MR. Prospective Biomarkers from Plasma Metabolomics of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome Implicate Redox Imbalance in Disease Symptomatology. Metabolites. 2018 Dec 6;8(4):90. doi: 10.3390/metabo8040090.
Run univariate tests
Run univariate tests using rstatix on metabolomics data, and plot volcanoplots and half violin/hlaf boxplots of interesting metabolites with ggplot2. Also count total carbons and double bonds of lipid species, and plot them in a heatmap with fold change value.
Run multivariate tests
Run PCA and OPLS, and plot the results using ggplot2.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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