plotAllOPLS: plotAllOPLS

In AslaugL/thesisToolsOmics: Tools for analysing and plotting metabolomics data.

plotAllOPLS

Description

Plots an OPLS score plot, loading plot and s-plot.

Usage

plotAllOPLS(
  opls_object,
  org_df,
  metadata = TRUE,
  addLabels = FALSE,
  cov_cutoff = NULL,
  corr_cutoff = NULL,
  VIP_cutoff = NULL
)

Arguments

opls_object	A ropls object.
addLabels	If TRUE, adds labels to features above threshold values, if false no features have labels.
cov_cutoff	Any feature with a covariance score below this is colored gray.
corr_cutoff	Any feature with a correlation score below this is colored gray
VIP_cutoff	Any feature with a principal VIP score below this is colored gray.
ord_df	The original df used to doOPLS.
meta	Should setMetaData be used to add metadata to the plots? Default TRUE.

Value

A white plot element with the summary statistics of ropls opls model.

AslaugL/thesisToolsOmics documentation built on April 3, 2022, 8:16 p.m.