plotVolcano: plotVolcano
In AslaugL/thesisToolsOmics: Tools for analysing and plotting metabolomics data.
plotVolcano R Documentation
plotVolcano
Description
Creates vertical lines to separate the different fold change categories, lines are drawn with a default fold change of 1.5.
Usage
plotVolcano(df, fold_change_threshold = 1.5, features = NULL)
Arguments
df
Dataframe with a log2(FC) column with log2 fold change values, and a p.adj column with p-values.
fold_change_threshold
Where should the vertical lines be drawn in the plot to show the threshold for over/underrepresentation? Default 1.5.
features
Character string of features to be labelled, default NULL.
Value
A volcano ggplot, with upward triangles for upregulated features, downward triangles for downregulated features and circles for features below the threshold.
AslaugL/thesisToolsOmics documentation built on April 3, 2022, 8:16 p.m.
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| plotVolcano | R Documentation |
plotVolcano
Description
Creates vertical lines to separate the different fold change categories, lines are drawn with a default fold change of 1.5.
Usage
plotVolcano(df, fold_change_threshold = 1.5, features = NULL)
Arguments
df |
Dataframe with a log2(FC) column with log2 fold change values, and a p.adj column with p-values. |
fold_change_threshold |
Where should the vertical lines be drawn in the plot to show the threshold for over/underrepresentation? Default 1.5. |
features |
Character string of features to be labelled, default NULL. |
Value
A volcano ggplot, with upward triangles for upregulated features, downward triangles for downregulated features and circles for features below the threshold.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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