calculateFoldChange: calculateFoldChange

In AslaugL/thesisToolsOmics: Tools for analysing and plotting metabolomics data.

calculateFoldChange

Description

Calculates the fold change and log2 fold change between cases and controls.

Usage

calculateFoldChange(df, type = "median", case, control)

Arguments

df	Dataframe with a 'feature' column with feature names, a 'sample_id' column with sample ID's, a 'value' column with feature values for the samples, and a 'group' column splitting the samples into two groups (cases and controls).
type	Calculate fold change from mean or median values? Default is 'median'.
case	What are cases called in the 'group' column?
control	What are controls called in the 'group' column?

Value

A dataframe with features and fold change/log2 fold change between cases and controls.

AslaugL/thesisToolsOmics documentation built on April 3, 2022, 8:16 p.m.