Man pages for Atlantis-Ecosystem-Model/ReactiveAtlantis
Multiple Reactive HTML tools to help in the calibration of the Atlantis ecosystem model (AEM)
| BH.rec | Beverton Equation |
| bio.age | Biomass for age groups |
| Bio.ages | Biomass by age class |
| Bio.func | Biomass from nc file |
| bio.pool | Biomass for age groups |
| bio.pwn | Biomass for age groups |
| boxes.prop | Box information |
| catch | Analysis of the Harvest in Atlantis |
| compare | Compare Outputs |
| dot-calc.mort | Extranting mortality values from the txt files provided by... |
| dot-point_in_polygon | Raycasting Algorithm to find out whether a point is in a... |
| feeding.mat | Atlantis feeding tool |
| find.z | Num layer per box |
| food.web | Trophic level |
| gape.func | Calculate the gape limitation for each functional group |
| growth.pp | Limitation Growth primary producers |
| make.map | Function to get the vertices of the bgm map for Atlantis |
| mortality | Mortality analysis for Atlantis |
| nitro.weight | Calculate the different weigt (estructural reserve) and... |
| ord | Piramid order |
| Over.mat.func | Overlap matrix |
| plot.age.total | Interactive Plot for biomass (structural and reserve... |
| plot.catch | Plot catch function |
| plot.tlvl | Plot trophic levels |
| predation | Predation analysis |
| prey.pos | Assing trophic level of the prey the values are based on... |
| read.var | Reading Discard and Catch by number and box |
| recruitment.cal | Estimation of Recruitment and primary producer growth |
| relative | Calculate the value of a time serie based on the first value |
| Ricker.rec | Ricker recruitment equation |
| saveData | Save pPREY matrix |
| sepText | text separatror |
| skill_assessment | Skill assessment of the model |
| text2num | Parameter file reader |
| theme_atlantis | Main Atlatnis Theme |
| time_calc | NCtime calculation |
| Tlevel | Throphic level estimation. Equation based on Pauly et al 1998... |
| to.save | Function to save data |
| tot.prey | Total predation |
| trophic.lvl | Trophic level |
| var.fish | Total catch and discard in biomass |
