recruitment.cal: Estimation of Recruitment and primary producer growth

Description Usage Arguments Value Author(s)

View source: R/recruitment.R

Description

This function helps to estimate the recruitment for age structured functional groups and the primary and secondary production.

Usage

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recruitment.cal(ini.nc.file, out.nc.file, yoy.file, grp.file, prm.file,
  quiet = TRUE)

Arguments

ini.nc.file

Character string with the path to the netcdf file to read in. This netcdf file contains the initial conditions for the Atlantis model and usually ends in .nc.

out.nc.file

Character string with the path to the netcdf file to read in. This netcdf file contains a generic output from an Atlantis run usually starting with output and ending in .nc.

yoy.file

Character string with the path to Young of the Year (YOY) standard output file. Usually the name for this file is : output[YOUR_MODEL]YOY.txt where [YOUR_MODEL] is the name of your Atlantis model.

grp.file

Character string with the path to the Groups *.csv file (Atlantis input file).

prm.file

Character string with the path to the biology parameter file *.prm (Atlantis input file).

quiet

(Default = TRUE) this parameter helps during the process of debugging.

Value

The outputs of this function are divided into 3 tabs:

Author(s)

Demiurgo


Atlantis-Ecosystem-Model/ReactiveAtlantis documentation built on Dec. 7, 2018, 7:59 a.m.