mortality: Mortality analysis for Atlantis

In Atlantis-Ecosystem-Model/ReactiveAtlantis: Multiple Reactive HTML tools to help in the calibration of the Atlantis ecosystem model (AEM)

Mortality analysis for Atlantis

Description

This function helps to explore the different types of mortalities in an Atlantis model. Technically, this function takes the results of mortality from Atlantis and compares them. This includes temporal components of natural, fishing and predation mortality. This function also explores the different mortalities in space and time.

Usage

mortality(grp.file, prm.file, SpeMort, PredMort)

Arguments

grp.file	Character string with the path to the groups *.csv file (Atlantis input file).
prm.file	Parameter file
SpeMort	Character string with the path to the plain text Specific mortality file *SpecificMort.txt (Atlantis output file).
PredMort	Character string with the path to the plain text predation morality file *SpecificPredMort.txt (Atlantis output file).

Value

A reactive output with plots to analyse mortality in Atlantis

Author(s)

Javier Porobic

Atlantis-Ecosystem-Model/ReactiveAtlantis documentation built on April 16, 2024, 6:27 a.m.