growth.pp: Limitation Growth primary producers

Description Usage Arguments Value Author(s)

View source: R/growth.R

Description

This function helps you visualize what are the possible factors that limit the growth of primary producers. Primary producers in Atlantis are limited in their biomass by variables such as: nutrients, light, space, and by processes such as acidification and the presence of eddies (Audijyontze et al. 2017). In this function, most of these factors are analyzed, except for the acidification process and the spatial limitation.

Usage

1
growth.pp(ini.nc.file, grp.file, prm.file, out.nc.file)

Arguments

ini.nc.file

Character string with the path to the netcdf file to read in. This netcdf file contains the initial conditions for the Atlantis model usually ends in .nc.

grp.file

Character string with the path to the Groups *.csv file (Atlantis input file).

prm.file

Character string with the path to the biology parameter file *.prm.

out.nc.file

Character string with the path to the netcdf file to read in. This netcdf file is a generic output from an Atlantis run and usually starts with output and ends in .nc.

Value

A reactive HTML with graphical output by functional group, for layer and box of the following variables:

Author(s)

Demiurgo


Atlantis-Ecosystem-Model/ReactiveAtlantis documentation built on Dec. 7, 2018, 7:59 a.m.