compare: Compare Outputs

Description Usage Arguments Value Author(s)

View source: R/compare.R

Description

This function allows visualization of either the output from a simulation or comparison between two different Atlantis simulations. The user can compare biomasses, abundance, structural or reserve nitrogen between two different outputs. The user is also able to check the changes is these variables by age for the different functional groups.

Usage

1
compare(nc.out.current, nc.out.old = NULL, grp.csv, bgm.file, cum.depths)

Arguments

nc.out.current

Current netcdf output file. Character string with the path to the netcdf file to read in. This netcdf file contains a generic output from an Atlantis run and usually starts with output and ends in .nc.

nc.out.old

(Default = NULL) This is the character string with the path to the second netcdf output file to read in (used only for comparisons). This netcdf file contains a generic output from an Atlantis run and usually starts with output and ends in .nc.

grp.csv

Character string with the path to the Groups *.csv file (Atlantis input file).

bgm.file

Character string with the path to the XY coordinates Atlantis input file *.bgm with the information in metres.

cum.depths

Cumulative depth of the Atlantis model

Value

A reactive HTML that is divided in 3 different panels:

Author(s)

Demiurgo


Atlantis-Ecosystem-Model/ReactiveAtlantis documentation built on Dec. 7, 2018, 7:59 a.m.