Man pages for BIGslu/RNAetc
RNA-seq Data Cleaning And Analysis
| calculate_module_coherence | Calculate WGCNA module coherence |
| clean_metrics | Clean alignment metrics into a data frame |
| collapse_voom | Combine all parts of a voom object into a single dataframe |
| combine_voom | Combine 2 voom objects into 1 |
| compare_modules | Compare WGCNA module builds |
| example.dat | kimma example DGEList. |
| example.kin | kimma example kinship. |
| example.mods | Example dataframe defining gene co-expression modules. |
| example.voom | kimma example EList. |
| filter_rare | Filter rare and low abundance genes |
| fit_modules | Perform soft thresholding in preparation for WGCNA module... |
| make_modules | Construct WGCNA modules and associated data |
| pipe | Pipe operator |
| read_fcounts | Read in counts table from Subread featureCounts |
| subset_voom | Subset voom object |
