example.mods: Example dataframe defining gene co-expression modules.

In BIGslu/RNAetc: RNA-seq Data Cleaning And Analysis

Example dataframe defining gene co-expression modules.

Description

Example gene-coexpression modules defined in a dataframe.

Usage

example.mods

Format

A data frame with 1000 rows and 8 variables:

geneName

character. ENSEMBL gene ID

module

dbl. Module number defined by WGNCA

module.char

character. Module number as character defined by WGNCA

mod.color

character Module name as defined by WGNCA

hgnc_symbol

character. Current approved HGNC symbol.

Previous symbols

character. Previous HGNC symbols.

Alias symbols

character. Alias HGNC symbols.

gene_biotype

character. Gene product type. All = protein-coding.

Source

https://github.com/altman-lab/P259_pDC_public

References

Dill-McFarland et al. 2021. Eosinophil-mediated suppression and Anti-IL-5 enhancement of plasmacytoid dendritic cell interferon responses in asthma. J Allergy Clin Immunol. In revision

BIGslu/RNAetc documentation built on Feb. 13, 2025, 7:42 a.m.