clean_metrics: Clean alignment metrics into a data frame
In BIGslu/RNAetc: RNA-seq Data Cleaning And Analysis
View source: R/clean_metrics.R
clean_metrics R Documentation
Clean alignment metrics into a data frame
Description
Clean alignment metrics into a data frame
Usage
clean_metrics(dir = "data_raw/metrics/", flagstat = TRUE, picard = TRUE)
Arguments
dir
Character. Path to directory containing metric files
flagstat
Logical. Include samtools flagstat metrics?
picard
Logical. Include Picard RNAseq metrics?
Value
Data frame with alignment quality metrics
BIGslu/RNAetc documentation built on Feb. 13, 2025, 7:42 a.m.
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View source: R/clean_metrics.R
| clean_metrics | R Documentation |
Clean alignment metrics into a data frame
Description
Clean alignment metrics into a data frame
Usage
clean_metrics(dir = "data_raw/metrics/", flagstat = TRUE, picard = TRUE)
Arguments
dir |
Character. Path to directory containing metric files |
flagstat |
Logical. Include samtools flagstat metrics? |
picard |
Logical. Include Picard RNAseq metrics? |
Value
Data frame with alignment quality metrics
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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