collapse_voom: Combine all parts of a voom object into a single dataframe

In BIGslu/RNAetc: RNA-seq Data Cleaning And Analysis

Combine all parts of a voom object into a single dataframe

Description

Combine all parts of a voom object into a single dataframe

Usage

collapse_voom(
  dat,
  libraryID = "libID",
  geneID = "geneName",
  include_weights = FALSE
)

Arguments

dat	EList voom object resulting from voom() or voomWithQualityWeights()
libraryID	Character. Column name in dat$targets that matches column names in dat$E
geneID	Character. Column name in dat$genes that matches row names in dat$E
include_weights	Logical. If gene-level weights should be included in the result. Default is FALSE

Value

data frame

Examples

combined <- collapse_voom(example.voom)

BIGslu/RNAetc documentation built on Feb. 13, 2025, 7:42 a.m.