events.selection: events.selection

In BIMIB-DISCo/TRONCO: TRONCO, an R package for TRanslational ONCOlogy

events.selection

Description

select a subset of the input genotypes 'x'. Selection can be done by frequency and gene symbols.

Usage

events.selection(
  x,
  filter.freq = NA,
  filter.in.names = NA,
  filter.out.names = NA,
  silent = FALSE
)

Arguments

x	A TRONCO compliant dataset.
filter.freq	[0,1] value which constriants the minimum frequence of selected events
filter.in.names	gene symbols which will be included
filter.out.names	gene symbols which will NOT be included
silent	A parameter to disable/enable verbose messages.

Value

A TRONCO compliant dataset.

Examples

data(test_dataset)
dataset = events.selection(test_dataset, 0.3)

BIMIB-DISCo/TRONCO documentation built on March 31, 2024, 9:20 p.m.