as.selective.advantage.relations: as.selective.advantage.relations

View source: R/as.functions.R

as.selective.advantage.relationsR Documentation

as.selective.advantage.relations

Description

Returns a dataframe with all the selective advantage relations in a TRONCO model. Confidence is also shown - see as.confidence. It is possible to specify a subset of events or models if multiple reconstruction have been performed.

Usage

as.selective.advantage.relations(
  x,
  events = as.events(x),
  models = names(x$model),
  type = "fit"
)

Arguments

x

A TRONCO model.

events

A subset of events as of as.events(x), all by default.

models

A subset of reconstructed models, all by default.

type

Either Prima Facie ('pf') or fit ('fit') probabilities, 'fit' by default.

Value

All the selective advantage relations in a TRONCO model

Examples

data(test_model)
as.selective.advantage.relations(test_model)
as.selective.advantage.relations(test_model, events=as.events(test_model)[5:15,])
as.selective.advantage.relations(test_model, events=as.events(test_model)[5:15,], type='pf')


BIMIB-DISCo/TRONCO documentation built on March 25, 2024, 8:05 p.m.