annotate.stages: annotate.stages

In BIMIB-DISCo/TRONCO: TRONCO, an R package for TRanslational ONCOlogy

annotate.stages

Description

Annotate stage information on the selected dataset

Usage

annotate.stages(x, stages, match.TCGA.patients = FALSE)

Arguments

x	A TRONCO compliant dataset.
stages	A list of stages. Rownames must match samples list of x
match.TCGA.patients	Match using TCGA notations (only first 12 characters)

Value

A TRONCO compliant dataset.

Examples

data(test_dataset)
data(stage)
test_dataset = annotate.stages(test_dataset, stage)
as.stages(test_dataset)

BIMIB-DISCo/TRONCO documentation built on March 31, 2024, 9:20 p.m.