annotate.stages: annotate.stages
In BIMIB-DISCo/TRONCO: TRONCO, an R package for TRanslational ONCOlogy
View source: R/editing.functions.R
annotate.stages R Documentation
annotate.stages
Description
Annotate stage information on the selected dataset
Usage
annotate.stages(x, stages, match.TCGA.patients = FALSE)
Arguments
x
A TRONCO compliant dataset.
stages
A list of stages. Rownames must match samples list of x
match.TCGA.patients
Match using TCGA notations (only first 12 characters)
Value
A TRONCO compliant dataset.
Examples
data(test_dataset)
data(stage)
test_dataset = annotate.stages(test_dataset, stage)
as.stages(test_dataset)
BIMIB-DISCo/TRONCO documentation built on Nov. 5, 2024, 3:44 a.m.
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View source: R/editing.functions.R
| annotate.stages | R Documentation |
annotate.stages
Description
Annotate stage information on the selected dataset
Usage
annotate.stages(x, stages, match.TCGA.patients = FALSE)
Arguments
x |
A TRONCO compliant dataset. |
stages |
A list of stages. Rownames must match samples list of x |
match.TCGA.patients |
Match using TCGA notations (only first 12 characters) |
Value
A TRONCO compliant dataset.
Examples
data(test_dataset)
data(stage)
test_dataset = annotate.stages(test_dataset, stage)
as.stages(test_dataset)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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