Man pages for Berghopper/GAPGOM
GAPGOM (novel Gene Annotation Prediction and other GO Metrics)
| ambiguous_functions | GAPGOM internal - Ambiguous/prediction functions |
| dag_funcs | GAPGOM internal - Directed acyclic graph (DAG) mathematical... |
| dot-enrichment_analysis | GAPGOM internal - enrichment_analysis() |
| dot-entrezraw_to_entrez | GAPGOM internal - .entrezraw_to_entrez() |
| dot-ext_id_to_term_id | GAPGOM internal - .ext_id_to_term_id() |
| dot-fantom_filter_entrez | GAPGOM internal - .fantom_filter_entrez() |
| dot-generate_translation_df | GAPGOM internal - .generate_translation_df() |
| dot-get_package_version | GAPGOM internal - .get_package_version() |
| dot-go_ids_lookup | GAPGOM internal - .go_ids_lookup() |
| dot-organism_to_species_lib | GAPGOM internal - .organism_to_species_lib() |
| dot-prepare_score_df | GAPGOM internal - .prepare_score_df() |
| dot-prepare_score_matrix_topoicsim | GAPGOM internal - .prepare_score_matrix_topoicsim() |
| dot-prepare_variables_topoicsim | GAPGOM internal - .prepare_variables_topoicsim() |
| dot-resolve_genes_unique_gos | GAPGOM internal - .resolve_genes_unique_gos() |
| dot-resolve_keys_col | GAPGOM internal - .resolve_keys_col() |
| dot-set_identical_items | GAPGOM internal - .set_identical_items() |
| dot-set_values | GAPGOM internal - .set_values() |
| dot-term_id_to_ext_id | GAPGOM internal - .term_id_to_ext_id() |
| dot-topo_ic_sim_g1g2 | GAPGOM internal - .topo_ic_sim_g1g2() |
| dot-topo_ic_sim_geneset | GAPGOM internal - .topo_ic_sim() |
| dot-topo_ic_sim_titj | GAPGOM internal - .topo_ic_sim_titj() |
| dot-unique_combos | GAPGOM internal - .unique_combos() |
| expression_prediction | GAPGOM - expression_prediction() |
| expression_semantic_scoring | GAPGOM - expression_prediction() |
| expset | GAPGOM - Expression Data. |
| fantom_download | GAPGOM - fantom_download() |
| fantom_load_raw | GAPGOM - fantom_load_raw() |
| fantom_to_expset | GAPGOM - fantom_to_expset() |
| geometrical_measures | GAPGOM internal - Geometrical Similarity Measures |
| glb_checks | GAPGOM internal - Global argument checks |
| id_translation_df | GAPGOM - id_translation_df |
| misc_functions | GAPGOM internal - Miscellaneous functions |
| set_go_data | GAPGOM - set_go_data() |
| topo_ic_sim_genes | GAPGOM - topo_ic_sim_genes() |
| topo_ic_sim_term | GAPGOM - topo_ic_sim_term() |
