fantom_download: GAPGOM - fantom_download()

Description Usage Arguments Details Value Examples

Description

Downloads and unpacks fantom5 data of either human or mouse.

Usage

1
fantom_download(organism = "human", unpack = TRUE, noprompt = FALSE)

Arguments

organism

Either "mouse" or "human". FANTOM5 only has these two as fully annotated+tpm normalized datasets.

unpack

Default=TRUE, if set to TRUE, file will be unpacked automatically.

noprompt

Default=FALSE, user prompt, if you are 100 download and have enough space, set this to TRUE.

Details

This function downloads the whole fantom5 dataset and unpacks it. automatic unpacking can be turned off. The file is downloaded to a special caching directory, which will be returned on exit.

Value

The resulting filename/location of the file or NULL if cancelled.

Examples

1
fantom_file <- fantom_download(organism = "mouse", noprompt = TRUE)

Berghopper/GAPGOM documentation built on July 2, 2020, 11:57 p.m.