fantom_download: GAPGOM - fantom_download()

In Berghopper/GAPGOM: GAPGOM (novel Gene Annotation Prediction and other GO Metrics)

Description

Downloads and unpacks fantom5 data of either human or mouse.

Usage

fantom_download(organism = "human", unpack = TRUE, noprompt = FALSE)

Arguments

organism	Either "mouse" or "human". FANTOM5 only has these two as fully annotated+tpm normalized datasets.
unpack	Default=TRUE, if set to TRUE, file will be unpacked automatically.
noprompt	Default=FALSE, user prompt, if you are 100 download and have enough space, set this to TRUE.

Details

This function downloads the whole fantom5 dataset and unpacks it. automatic unpacking can be turned off. The file is downloaded to a special caching directory, which will be returned on exit.

Value

The resulting filename/location of the file or NULL if cancelled.

Examples

fantom_file <- fantom_download(organism = "mouse", noprompt = TRUE)

Berghopper/GAPGOM documentation built on July 2, 2020, 11:57 p.m.