fantom_load_raw: GAPGOM - fantom_load_raw()

In Berghopper/GAPGOM: GAPGOM (novel Gene Annotation Prediction and other GO Metrics)

Description

Loads raw fantom5 data from file.

Usage

fantom_load_raw(filepath, verbose = FALSE, example = FALSE)

Arguments

filepath	filename of fantom5 file.
verbose	Switch to TRUE for extra messages. Default=FALSE
example	Boolean switch for R CMD Check (NOT MEANT TO BE TURNED ON FOR END-USERS).

Details

This function loads raw fantom5 data and returns the resulting data.table/ data.frame object.

Value

The resulting datatable containing raw fantom5 data. (Most of the time very large!)

Examples

fantom_file <- fantom_download(organism = "mouse", noprompt = TRUE)
ft5 <- fantom_load_raw(fantom_file, verbose = TRUE, example = TRUE)

Berghopper/GAPGOM documentation built on July 2, 2020, 11:57 p.m.