glb_checks: GAPGOM internal - Global argument checks

In Berghopper/GAPGOM: GAPGOM (novel Gene Annotation Prediction and other GO Metrics)

Description

These functions are internal functions and should not be called by the user.

Usage

.check_ifclass(obj, classname, objname, accept_null = TRUE)

.check_gos(gos)

.check_custom_gene(cus_gen)

.check_idtype(idtype, organism)

.check_organism(organism)

.check_ontology(ontology)

.check_method(method)

Details

These check make sure that user input is correct for both TopoICSim and lncRNApred. They mainly include very generalistic checks.

Value

output is different on a case-to-case basis, but is a boolean determining if the input is correct.

Notes

Internal functions used in both algorithms.

Berghopper/GAPGOM documentation built on July 2, 2020, 11:57 p.m.