expset: GAPGOM - Expression Data.

In Berghopper/GAPGOM: GAPGOM (novel Gene Annotation Prediction and other GO Metrics)

Description

A Bioconductor ExpressionSet object containing a subset from the lncRNA2Function data.[1] Because the original lncRNA2Function data was unavailable for some time, this subset is selected with expression data from (this is based on the lncRNA2Function however): https://tare.medisin.ntnu.no/pred_lncRNA/ . The original lncRNA2Function data is now online on a new domain: http://bio-annotation.cn/lncrna2function/

Usage

expset

Format

An ExpressionSet containing 1001 rows of the lncRNA2Function expression dataset. Annotation data can be found under; pData(featureData(GAPGOM::expset)) and expression values under; assayData(GAPGOM::expset)[["exprs"]]

Source

http://bio-annotation.cn/lncrna2function/

References

[1]. Jiang Q et al.: LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data. in: BMC Genomics, 2015, doi: 10.1186/1471-2164-16-S3-S2.

Berghopper/GAPGOM documentation built on July 2, 2020, 11:57 p.m.