PlotAcquisitionCycle: Acquisition Cycle and MS/MS

Description Usage Arguments Value Examples

View source: R/PlotAcquisitionCycle.R

Description

Acquisition Cycle and MS/MS

Usage

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PlotAcquisitionCycle(MQCombined, palette = "Set2", plots_per_page = 5)

Arguments

MQCombined

Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.

palette

The palette from the Package RColorBrewer. By default is 'Set2'.

plots_per_page

Establish the maximum number of plots per page.

Value

Two plots per sample, one with the cycle tyme vs retention time, and MS/MS count vs retention time.

Examples

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MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotAcquisitionCycle(MQCombined)

BioAlvaro/MQviewer documentation built on Jan. 11, 2022, 8:25 p.m.