PlotMsMs: Comparison of the MS/MS submitted and identified in each...

Description Usage Arguments Value Examples

View source: R/PlotMsMs.R

Description

Comparison of the MS/MS submitted and identified in each sample.

Usage

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PlotMsMs(
  MQCombined,
  long_names = FALSE,
  sep_names = NULL,
  position_dodge_width = 1,
  palette = "Set2"
)

Arguments

MQCombined

Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.

long_names

If TRUE, samples having long names will be considered, and the name will be split by sep_names. By default = FALSE.

sep_names

If long_names is TRUE, sep_names has to be selected. Samples names will be split. By default is NULL.

position_dodge_width

Position of the columns within each others.

palette

The palette from the Package RColorBrewer. By default is 'Set2'.

Value

Plots the MS/MS submitted and Identified in each sample.

Examples

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MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotMsMs(MQCombined)

BioAlvaro/MQviewer documentation built on Jan. 11, 2022, 8:25 p.m.