PlotHydrophobicity: Peptide hydrophobicity by GRAVY score

Description Usage Arguments Value Examples

View source: R/PlotHydrophobicity.R

Description

Peptide hydrophobicity by GRAVY score

Usage

1
2
3
4
5
6
7
8
9
PlotHydrophobicity(
  MQCombined,
  show_median = TRUE,
  size_median = 1.5,
  binwidth = 0.2,
  palette = "Set2",
  plots_per_page = 5,
  tabular_output = FALSE
)

Arguments

MQCombined

Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.

show_median

If true it will show the median of each group, as a red dashed line.By default is TRUE.

size_median

The width of the median line in the plots.

binwidth

Selects the binwidth of the histogram. By default = 0.2

palette

The palette from the Package RColorBrewer. By default is 'Set2'.

plots_per_page

Establish the maximum number of plots per page.

tabular_output

If true a table with the information will be the output.

Value

Returns a histogram per sample, showing the frequency of the peptide's hydrophobicity GRAVY value.

Examples

1
2
3
MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotHydrophobicity(MQCombined)

BioAlvaro/MQviewer documentation built on Jan. 11, 2022, 8:25 p.m.