API for BioSok/omada
Machine learning tools for automated transcriptome clustering analysis

Global functions
Index.SDbw Source code
centers Source code
clusterVoting Man page Source code
clusteringMethodSelection Man page Source code
density.bw Source code
density.clusters Source code
feasibilityAnalysis Man page Source code
feasibilityAnalysisDataBased Man page Source code
featureSelection Man page Source code
geneSignatures Man page Source code
get_agreement_scores Man page Source code
get_agreement_scores.partitionAgreement Source code
get_average_feature_k_stabilities Man page Source code
get_average_feature_k_stabilities.featureSelection Source code
get_average_stabilities_per_k Man page Source code
get_average_stabilities_per_k.feasibilityAnalysis Source code
get_average_stability Man page Source code
get_average_stability.feasibilityAnalysis Source code
get_cluster_memberships_k Man page Source code
get_cluster_memberships_k.clusterVoting Source code
get_cluster_voting_k_votes Man page Source code
get_cluster_voting_k_votes.clusterAnalysis Source code
get_cluster_voting_memberships Man page Source code
get_cluster_voting_memberships.clusterAnalysis Source code
get_cluster_voting_metric_votes Man page Source code
get_cluster_voting_metric_votes.clusterAnalysis Source code
get_cluster_voting_scores Man page Source code
get_cluster_voting_scores.clusterAnalysis Source code
get_coefficient_dataset Man page Source code
get_coefficient_dataset.geneSignature Source code
get_feature_selection_optimal_features Man page Source code
get_feature_selection_optimal_features.clusterAnalysis Source code
get_feature_selection_optimal_number_of_features Man page Source code
get_feature_selection_optimal_number_of_features.clusterAnalysis Source code
get_feature_selection_scores Man page Source code
get_feature_selection_scores.clusterAnalysis Source code
get_generated_dataset Man page Source code
get_generated_dataset.feasibilityAnalysis Source code
get_internal_metric_scores Man page Source code
get_internal_metric_scores.clusterVoting Source code
get_max_stability Man page Source code
get_max_stability.feasibilityAnalysis Source code
get_metric_votes_k Man page Source code
get_metric_votes_k.clusterVoting Source code
get_optimal_features Man page Source code
get_optimal_features.featureSelection Source code
get_optimal_memberships Man page Source code
get_optimal_memberships.optimalClustering Source code
get_optimal_number_of_features Man page Source code
get_optimal_number_of_features.featureSelection Source code
get_optimal_parameter_used Man page Source code
get_optimal_parameter_used.optimalClustering Source code
get_optimal_stability_score Man page Source code
get_optimal_stability_score.optimalClustering Source code
get_partition_agreement_scores Man page Source code Source code
get_partition_agreement_scores.clusterAnalysis Source code
get_partition_agreement_scores.methodSelection Source code
get_sample_memberships Man page Source code
get_sample_memberships.clusterAnalysis Source code
get_signature_feature_coefs Man page Source code
get_signature_feature_coefs.clusterAnalysis Source code
get_top30percent_coefficients Man page Source code
get_top30percent_coefficients.geneSignature Source code
get_vote_frequencies_k Man page Source code
get_vote_frequencies_k.clusterVoting Source code
omada Man page Source code
optimalClustering Man page Source code
partitionAgreement Man page Source code
plot_average_stabilities Man page Source code
plot_average_stabilities.featureSelection Source code
plot_cluster_voting Man page Source code
plot_cluster_voting.clusterAnalysis Source code
plot_feature_selection Man page Source code
plot_feature_selection.clusterAnalysis Source code
plot_partition_agreement Man page Source code Source code
plot_partition_agreement.clusterAnalysis Source code
plot_partition_agreement.methodSelection Source code
plot_signature_feature Man page Source code
plot_signature_feature.clusterAnalysis Source code
plot_top30percent_coefficients Man page Source code
plot_top30percent_coefficients.geneSignature Source code
plot_vote_frequencies Man page Source code
plot_vote_frequencies.clusterVoting Source code
toy_gene_memberships Man page
toy_genes Man page
BioSok/omada documentation built on Aug. 21, 2023, 2:38 p.m.