clusteringMethodSelection: Method Selection through intra-method Consensus Partition...

In BioSok/omada: Machine learning tools for automated transcriptome clustering analysis

Method Selection through intra-method Consensus Partition Consistency

Description

Method Selection through intra-method Consensus Partition Consistency

Usage

clusteringMethodSelection(data, method.upper.k = 5, number.of.comparisons = 3)

Arguments

data	A dataframe, where columns are features and rows are data points
method.upper.k	The number of clusters, k, up to which the average agreements will be calculated
number.of.comparisons	The number of comparisons to average over per k

Value

An object of class "methodSelection" containing a dataframe of partition agreement scores for a set of random parameters clustering runs across different methods and the corresponding plot

Examples

clusteringMethodSelection(toy_genes, method.upper.k = 3,
number.of.comparisons = 2)

BioSok/omada documentation built on Aug. 21, 2023, 2:38 p.m.