Files in BioSok/omada
Machine learning tools for automated transcriptome clustering analysis
DESCRIPTION
LICENSE
NAMESPACE
R/cluster_voting.R
R/clustering_method_selection.R
R/feasibility_analysis_based_on_data.R
R/feasibilty_analysis.R
R/feature_selection.R
R/gene_singatures.R
R/genes-data.R
R/genes-memberships-data.R
R/get_agreement_scores.R
R/get_average_feature_k_stabilities.R
R/get_average_stabilities_per_k.R
R/get_average_stability.R
R/get_cluster_memberships_k.R
R/get_cluster_voting_k_votes_omada.R
R/get_cluster_voting_memberships_omada.R
R/get_cluster_voting_metric_votes_omada.R
R/get_cluster_voting_scores_omada.R
R/get_coefficient_dataset.R
R/get_feature_selection_optimal_features_omada.R
R/get_feature_selection_optimal_number_of_features_omada.R
R/get_feature_selection_scores_omada.R
R/get_generated_dataset.R
R/get_internal_metric_scores.R
R/get_max_stability.R
R/get_metric_votes_k.R
R/get_optimal_features.R
R/get_optimal_memberships.R
R/get_optimal_number_of_features.R
R/get_optimal_parameter_used.R
R/get_optimal_stability_score.R
R/get_partition_agreement_scores.R
R/get_partition_agreement_scores_omada.R
R/get_sample_memberships_omada.R
R/get_signature_feature_coefs_omada.R
R/get_top30percent_coefficients.R
R/get_vote_frequencies_k.R
R/omada.R
R/optimal_clustering.R
R/partition_agreement.R
R/plot_average_stabilities.R
R/plot_cluster_voting_omada.R
R/plot_feature_selection_omada.R
R/plot_partition_agreement.R
R/plot_partition_agreement_omada.R
R/plot_signature_feature_omada.R
R/plot_top30percent_coefficients.R
R/plot_vote_frequencies.R
data/toy_gene_memberships.RData
data/toy_genes.RData
inst/NEWS.Rd
man/clusterVoting.Rd
man/clusteringMethodSelection.Rd
man/feasibilityAnalysis.Rd
man/feasibilityAnalysisDataBased.Rd
man/featureSelection.Rd
man/geneSignatures.Rd
man/get_agreement_scores.Rd
man/get_average_feature_k_stabilities.Rd
man/get_average_stabilities_per_k.Rd
man/get_average_stability.Rd
man/get_cluster_memberships_k.Rd
man/get_cluster_voting_k_votes.Rd
man/get_cluster_voting_memberships.Rd
man/get_cluster_voting_metric_votes.Rd
man/get_cluster_voting_scores.Rd
man/get_coefficient_dataset.Rd
man/get_feature_selection_optimal_features.Rd
man/get_feature_selection_optimal_number_of_features.Rd
man/get_feature_selection_scores.Rd
man/get_generated_dataset.Rd
man/get_internal_metric_scores.Rd
man/get_max_stability.Rd
man/get_metric_votes_k.Rd
man/get_optimal_features.Rd
man/get_optimal_memberships.Rd
man/get_optimal_number_of_features.Rd
man/get_optimal_parameter_used.Rd
man/get_optimal_stability_score.Rd
man/get_partition_agreement_scores.Rd
man/get_sample_memberships.Rd
man/get_signature_feature_coefs.Rd
man/get_top30percent_coefficients.Rd
man/get_vote_frequencies_k.Rd
man/omada.Rd
man/optimalClustering.Rd
man/partitionAgreement.Rd
man/plot_average_stabilities.Rd
man/plot_cluster_voting.Rd
man/plot_feature_selection.Rd
man/plot_partition_agreement.Rd
man/plot_signature_feature.Rd
man/plot_top30percent_coefficients.Rd
man/plot_vote_frequencies.Rd
man/toy_gene_memberships.Rd
man/toy_genes.Rd
tests/testthat.R
tests/testthat/test_clusterVoting.R
tests/testthat/test_clusteringMethodSelection.R
tests/testthat/test_featureSelection.R
tests/testthat/test_partitionAgreement.R
vignettes/omada-vignette.Rmd
