omada: A wrapper function that utilizes all tools to produce the...

In BioSok/omada: Machine learning tools for automated transcriptome clustering analysis

A wrapper function that utilizes all tools to produce the optimal sample memberships

Description

A wrapper function that utilizes all tools to produce the optimal sample memberships

Usage

omada(data, method.upper.k = 5)

Arguments

data	A dataframe, where columns are features and rows are data points
method.upper.k	The upper limit of clusters, k, to be considered. Must be more than 2

Value

An object of class "clusterAnalysis" containing partition.agreement.scores,partition.agreement.plot,feature.selection.scores, feature.selection.plot, feature.selection.optimal.features, feature.selection.optimal.number.of.features, cluster.voting.scores, cluster.voting.cluster.memberships,cluster.voting.metric.votes, cluster.voting.k.votes,cluster.voting.plot,sample.memberships, signature.feature.coefs and signature.feature.plot

Examples

omada(toy_genes, method.upper.k = 3)

BioSok/omada documentation built on Aug. 21, 2023, 2:38 p.m.