AnnotationHubData-package: Transform public data resources into Bioconductor Data...

In Bioconductor/AnnotationHubData: Transform public data resources into Bioconductor Data Structures

Transform public data resources into Bioconductor Data Structures

Description

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

Details

This package provides a set of methods which convert bioinformatic data resources into standard Bioconductor data types. For example, a UCSC genome browser track, expressed as a BED file, is converted into a GRanges object. Not every valuable data resource can be transformed quite so easily; some require more elaborate transformation, and hence a more specialized recipe. Every effort is made to limit the number of recipes required. One strategy that helps with the principle of "zero curation": unless absolutely required, the "cooked" version of the data resource produced by a recipe is a simple and unembellished reflection of the original data in its downloaded form.

Author(s)

Dan Tenenbaum, Paul Shannon

See Also

AnnotationHubMetadata-class, makeAnnotationHubMetadata

Bioconductor/AnnotationHubData documentation built on Feb. 15, 2024, 10:10 a.m.