DelayedSubassign-class: DelayedSubassign objects

In Bioconductor/DelayedArray: A unified framework for working transparently with on-disk and in-memory array-like datasets

DelayedSubassign objects

Description

NOTE: This man page is about DelayedArray internals and is provided for developers and advanced users only.

The DelayedSubassign class provides a formal representation of a delayed multi-dimensional single bracket subassignment. It is a concrete subclass of the DelayedUnaryIsoOp virtual class, which itself is a subclass of the DelayedUnaryOp virtual class, which itself is a subclass of the DelayedOp virtual class:

                          DelayedOp
                              ^
                              |
                       DelayedUnaryOp
                              ^
                              |
                      DelayedUnaryIsoOp
                              ^
                              |
                      DelayedSubassign
  

DelayedSubassign objects are used inside a DelayedArray object to represent the delayed multi-dimensional single bracket subassignments carried by the object. They're never exposed to the end user and are not intended to be manipulated directly.

Usage

## S4 method for signature 'DelayedSubassign'
is_noop(x)

## S4 method for signature 'DelayedSubassign'
summary(object, ...)

## ~ ~ ~ Seed contract ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~

## DelayedSubassign objects inherit the default dim()
## and dimnames() methods defined for DelayedUnaryIsoOp
## derivatives, but overwite their extract_array() method.

## S4 method for signature 'DelayedSubassign'
extract_array(x, index)

## ~ ~ ~ Propagation of sparsity ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~

## S4 method for signature 'DelayedSubassign'
is_sparse(x)

## S4 method for signature 'DelayedSubassign'
OLD_extract_sparse_array(x, index)

Arguments

x, object	A DelayedSubassign object.
index	See ?extract_array in the S4Arrays package for a description of the index argument.
...	Not used.

See Also

• DelayedOp objects.

• showtree to visualize the nodes and access the leaves in the tree of delayed operations carried by a DelayedArray object.

• extract_array in the S4Arrays package.

• OLD_extract_sparse_array.

Examples

## DelayedSubassign extends DelayedUnaryIsoOp, which extends
## DelayedUnaryOp, which extends DelayedOp:
extends("DelayedSubassign")

## ---------------------------------------------------------------------
## BASIC EXAMPLE
## ---------------------------------------------------------------------
m0 <- matrix(1:30, ncol=5)
M2 <- M1 <- M0 <- DelayedArray(m0)
showtree(M0)

M1[2:5, 5:4] <- 100
showtree(M1)
class(M1@seed)        # a DelayedSubassign object

M2[2:5, 5:4] <- matrix(101:108, ncol=2)
showtree(M2)
class(M2@seed)        # a DelayedSubassign object

## ---------------------------------------------------------------------
## PROPAGATION OF SPARSITY
## ---------------------------------------------------------------------

## DelayedSubassign objects don't propagate sparsity at the moment, that
## is, is_sparse() always returns FALSE on them.

## ---------------------------------------------------------------------
## SANITY CHECKS
## ---------------------------------------------------------------------
stopifnot(class(M1@seed) == "DelayedSubassign")
stopifnot(class(M2@seed) == "DelayedSubassign")

Bioconductor/DelayedArray documentation built on March 4, 2024, 9:12 p.m.