compat: Functions and classes that have moved to S4Arrays

In Bioconductor/DelayedArray: A unified framework for working transparently with on-disk and in-memory array-like datasets

Functions and classes that have moved to S4Arrays

Description

Some functions and classes that used to be defined in the DelayedArray package have been moved to the new S4Arrays package in BioC 3.17. The corresponding symbols are still exported by the DelayedArray package for backward compatibility with existing code.

WARNING: This is a temporary situation only. Packages that import these symbols from DelayedArray must be modified to import them from S4Arrays instead.

These symbols are actually documented in the S4Arrays package. See:

• S4Arrays::t.Array

• S4Arrays::makeNindexFromArrayViewport

• S4Arrays::ArrayGrid

• S4Arrays::DummyArrayGrid

• S4Arrays::RegularArrayGrid

• S4Arrays::ArbitraryArrayGrid

• S4Arrays::extract_array

• S4Arrays::is_sparse

• S4Arrays::read_block

• S4Arrays::write_block

Bioconductor/DelayedArray documentation built on Nov. 18, 2024, 3:06 a.m.