inst/registered/UCSC_genomes/ce11.R
In Bioconductor/GenomeInfoDb: Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
GENOME <- "ce11"
ORGANISM <- "Caenorhabditis elegans"
ASSEMBLED_MOLECULES <- paste0("chr", c(as.character(as.roman(1:5)), "X", "M"))
CIRC_SEQS <- "chrM"
NCBI_LINKER <- list(
assembly_accession="GCA_000002985.3",
special_mappings=c(chrM="MT")
)
ENSEMBL_LINKER <- "chromAlias"
Bioconductor/GenomeInfoDb documentation built on April 19, 2024, 9:28 a.m.
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GENOME <- "ce11"
ORGANISM <- "Caenorhabditis elegans"
ASSEMBLED_MOLECULES <- paste0("chr", c(as.character(as.roman(1:5)), "X", "M"))
CIRC_SEQS <- "chrM"
NCBI_LINKER <- list(
assembly_accession="GCA_000002985.3",
special_mappings=c(chrM="MT")
)
ENSEMBL_LINKER <- "chromAlias"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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