Implement the HDF5Array, H5SparseMatrix, H5ADMatrix, and TENxMatrix classes, 4 convenient and memory-efficient array-like containers for representing and manipulating either: (1) a conventional (a.k.a. dense) HDF5 dataset, (2) an HDF5 sparse matrix (stored in CSR/CSC/Yale format), (3) the central matrix of an h5ad file (or any matrix in the /layers group), or (4) a 10x Genomics sparse matrix. All these containers are DelayedArray extensions and thus support all operations (delayed or block-processed) supported by DelayedArray objects.
Package details |
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Author | Hervé Pagès |
Bioconductor views | Annotation Coverage DataImport DataRepresentation GenomeAnnotation ImmunoOncology Infrastructure RNASeq Sequencing SingleCell |
Maintainer | Hervé Pagès <hpages.on.github@gmail.com> |
License | Artistic-2.0 |
Version | 1.33.6 |
URL | https://bioconductor.org/packages/HDF5Array |
Package repository | View on GitHub |
Installation |
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