Bioconductor/HDF5Array: HDF5 datasets as array-like objects in R
The HDF5Array package is an HDF5 backend for DelayedArray objects. It implements the HDF5Array, H5SparseMatrix, H5ADMatrix, and TENxMatrix classes, 4 convenient and memory-efficient array-like containers for representing and manipulating either: (1) a conventional (a.k.a. dense) HDF5 dataset, (2) an HDF5 sparse matrix (stored in CSR/CSC/Yale format), (3) the central matrix of an h5ad file (or any matrix in the /layers group), or (4) a 10x Genomics sparse matrix. All these containers are DelayedArray extensions and thus support all operations (delayed or block-processed) supported by DelayedArray objects.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Hervé Pagès |
| Bioconductor views | Annotation Coverage DataImport DataRepresentation GenomeAnnotation ImmunoOncology Infrastructure RNASeq Sequencing SingleCell |
| Maintainer | Hervé Pagès <hpages.on.github@gmail.com> |
| License | Artistic-2.0 |
| Version | 1.35.2 |
| URL | https://bioconductor.org/packages/HDF5Array |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
