Bioconductor/S4Vectors
Foundation of vector-like and list-like containers in Bioconductor

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Vignettes
Functions
1352
Source code
67
Man pages
40
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Bioconductor/S4Vectors: Foundation of vector-like and list-like containers in Bioconductor
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API

API for Bioconductor/S4Vectors
Foundation of vector-like and list-like containers in Bioconductor

Global functions
!,Rle-method Man page
!=,ANY,Vector-method Man page
!=,Vector,ANY-method Man page
!=,Vector,Vector-method Man page
$,DataFrameFactor-method Man page
$,List-method Man page
$<-,List-method Man page
%in%,ANY,Vector-method Man page
%in%,Rle,ANY-method Man page
%in%,Vector,ANY-method Man page
%in%,Vector,Vector-method Man page
&,FilterRules,FilterRules-method Man page
.AEbufs_free Source code
.AEbufs_use_malloc Source code
.Call2 Man page Source code
.Hits_summary Source code
.NSBS.character_OR_factor Source code
.NSBS.numeric Source code
.ReduceDefault Source code
.VectorAsDFrame Source code
.Vector_shiftApply Source code
.Vector_summary Source code
.add_missing_columns Source code
.adjust_elt_lengths Source code
.adjust_value_length Source code
.aggregate.List Source code
.aggregate.Rle Source code
.aggregate.Vector Source code
.aggregate_and_align_all_colnames Source code
.allEqualS4 Source code
.anyDuplicated.Vector Source code
.append_NAs_to_list_elts Source code
.append_list_element Source code
.as.data.frame.List Source code
.as.data.frame.Rle Source code
.as.list.List Source code
.as.list.SimpleList Source code
.as.list.TransposedDataFrame Source code
.atomic_sameAsPreviousROW Source code
.bindROWS_DFrame_objects Source code
.bindROWS_Factor_objects Source code
.bindROWS_Hits_objects Source code
.bindROWS_LLint_objects Source code
.bindROWS_Rle_objects Source code
.check_that_Hits_objects_are_concatenable Source code
.collapse_list_of_equal_vectors Source code
.combine_DFrame_cols Source code
.combine_DFrame_rows Source code
.compatible_Hits Source code
.compute_table Source code
.concatenate_two_Factor_objects Source code
.countMatches.default Source code
.count_Lnode_hits Source code
.count_Rnode_hits Source code
.defaultAsDFrame Source code
.default_bindROWS Source code
.default_showAsCell Source code
.diff.Rle Source code
.droplevels.Factor Source code
.droplevels.List Source code
.droplevels.Rle Source code
.duplicated.List Source code
.duplicated.Rle Source code
.duplicated.Vector Source code
.ellipsize Source code
.encode_as_Factor Source code
.expand Source code
.expandCols Source code
.fast_lsubset_List_by_List Source code
.fast_subset_List_by_LL Source code
.fast_subset_List_by_NL Source code
.fast_subset_List_by_RL Source code
.findAllMatchesInSmallTable Source code
.from_HitsList_SortedByQueryHitsList Source code
.from_Hits_to_SelfHits Source code
.from_Hits_to_SortedByQueryHits Source code
.from_Hits_to_naked_character_matrix_for_display Source code
.from_LLint_to_character Source code
.from_LLint_to_integer Source code
.from_LLint_to_logical Source code
.from_LLint_to_numeric Source code
.from_Pairs_to_naked_character_matrix_for_display Source code
.from_SortedByQueryHitsList_to_HitsList Source code
.from_character_to_LLint Source code
.from_integer_to_LLint Source code
.from_logical_to_LLint Source code
.from_numeric_to_LLint Source code
.get_showLines Source code
.harmonize_factor_levels Source code
.infer_Factor_class Source code
.is_valid_NL_subscript Source code
.islistfactor Source code
.list.names Source code Source code
.make_colnames Source code
.make_endoapply_ans Source code
.make_group_and_group_name Source code
.make_mcols Source code
.make_rownames Source code
.make_unlisted_names Source code
.matchIntegerPairs_hash Source code
.matchIntegerPairs_quick Source code
.matchIntegerQuads_hash Source code
.matchIntegerQuads_quick Source code
.match_name Source code
.mean.Rle Source code
.mergeByHits Source code
.merge_Vector_objects Source code
.merge_mcols Source code
.merge_naked_objects Source code
.nasafe_compare Source code
.new_Factor Source code
.new_Hits Source code
.normBindArgs Source code
.normargIntegerOrFactor Source code
.normargMethod Source code
.normarg_new.nnode Source code
.normarg_nodes.remapping Source code
.normarg_range_start Source code
.normarg_vector_length Source code
.numeric_sameAsPreviousROW Source code
.onLoad Source code
.onUnload Source code
.op1_apply Source code
.op2_apply Source code
.padToAlign Source code
.pasteTwoRles Source code
.preprocess_objects_to_bind Source code
.psummary.Rle Source code
.qualifyByName Source code
.relistToClass_DataFrame Source code
.remove_list_element Source code
.renameVector Source code
.rep_times_Rle Source code
.replaceCOLS_DFrame Source code
.replace_list_element Source code
.same_levels Source code
.selectListClassName Source code
.select_fast_path Source code
.selfmatchIntegerPairs_hash Source code
.selfmatchIntegerPairs_quick Source code
.selfmatchIntegerQuads_hash Source code
.selfmatchIntegerQuads_quick Source code
.set_index_storage_mode Source code
.set_names_on_unfactor_ans Source code
.set_showLines Source code
.show_DataFrame Source code
.show_Factor Source code
.show_Hits Source code
.show_LLint Source code
.show_TransposedDataFrame Source code
.sort_List Source code
.sort_Vector Source code
.subassign_columns Source code
.subscript_error Source code
.subset_TransposedDataFrame Source code
.sumprodRle Source code
.test Source code
.two_factor_comparison Source code
.unique.List Source code
.unique.Rle Source code
.unique.SimpleList Source code
.unique.Vector Source code
.unique_classes Source code
.unlist_LL_subscript Source code
.unlist_NL_subscript Source code
.unlist_RL_subscript Source code
.valid.DFrame.nrow Source code
.valid.DataFrame Source code
.valid.DataFrame.names Source code
.valid.DataFrame.rownames Source code
.valid.FilterRules Source code
.valid.FilterRules.active Source code
.valid.FilterRules.rules Source code
.valid.Hits Source code
.valid.Hits.from_or_to Source code
.valid.Hits.nnode Source code
.valid.SelfHits Source code
.valid.SimpleList Source code
.valid.SimpleList.listData Source code
.valid.SortedByQueryHits Source code
.valid_Rle Source code
.validate_Factor Source code
.validate_RectangularData Source code
.validate_Vector Source code
.validate_Vector_length Source code
.validate_Vector_mcols Source code
.validate_Vector_names Source code
.validate_Vector_parallel_slots Source code
.validate_index_slot Source code
.validate_levels_slot Source code
.wrap_in_length_one_list_like_object Source code
<,ANY,Vector-method Man page
<,Vector,ANY-method Man page
<,Vector,Vector-method Man page
<=,ANY,Vector-method Man page
<=,DataFrame,DataFrame-method Man page
<=,Vector,ANY-method Man page
<=,Vector,Vector-method Man page
==,ANY,Vector-method Man page
==,DataFrame,DataFrame-method Man page
==,Vector,ANY-method Man page
==,Vector,Vector-method Man page
>,ANY,Vector-method Man page
>,Vector,ANY-method Man page
>,Vector,Vector-method Man page
>=,ANY,Vector-method Man page
>=,Vector,ANY-method Man page
>=,Vector,Vector-method Man page
Annotated Man page
Annotated-class Man page
Complex,Rle-method Man page
DFrame Man page
DFrame-class Man page
DataFrame Man page Source code
DataFrame-class Man page
DataFrame-combine Man page
DataFrame-utils Man page
DataFrameFactor Man page Source code
DataFrameFactor-class Man page
DataFrame_OR_NULL Man page
DataFrame_OR_NULL-class Man page
Factor Man page Source code
Factor-class Man page
FactorToClass Man page
FactorToClass,vector_OR_Vector-method Man page
Filter,List-method Man page
FilterMatrix Man page
FilterMatrix-class Man page
FilterRules Man page Source code
FilterRules-class Man page
FilterRules.parseRule Source code
Find,List-method Man page
H_recycle Source code
Has Source code
Hits Man page Source code
Hits-class Man page
Hits-comparison Man page
Hits-setops Man page
HitsList Man page Source code
HitsList-class Man page
I Source code
IQR,Rle-method Man page
LLint Man page Source code
LLint-class Man page
List Man page Source code
List-class Man page
List-utils Man page
Map,List-method Man page
Math,Rle-method Man page
Math2,Rle-method Man page
ModelFrame Source code
NA_LLint_ Man page
NSBS Man page
NSBS,ANY-method Man page
NSBS,NSBS-method Man page
NSBS,NULL-method Man page
NSBS,Rle-method Man page
NSBS,character-method Man page
NSBS,factor-method Man page
NSBS,logical-method Man page
NSBS,missing-method Man page
NSBS,numeric-method Man page
NSBS-class Man page
NativeNSBS Source code
Ops,LLint,LLint-method Man page
Ops,LLint,numeric-method Man page
Ops,Rle,Rle-method Man page
Ops,Rle,vector-method Man page
Ops,numeric,LLint-method Man page
Ops,vector,Rle-method Man page
Pairs Man page Source code
Pairs-class Man page
Position,List-method Man page
ROWNAMES Man page
ROWNAMES,ANY-method Man page
ROWNAMES,RectangularData-method Man page
ROWNAMES<- Man page
ROWNAMES<-,ANY-method Man page
ROWNAMES<-,RectangularData-method Man page
RangeNSBS Source code
RectangularData Man page
RectangularData-class Man page
Reduce,List-method Man page
Rle Man page
Rle,ANY-method Man page
Rle,Rle-method Man page
Rle-class Man page
Rle-runstat Man page
Rle-utils Man page
SelfHits Man page Source code
SelfHits-class Man page
SelfHitsList Man page
SelfHitsList-class Man page
SimpleList Man page Source code
SimpleList-class Man page
SortedByQueryHits Man page
SortedByQueryHits-class Man page
SortedByQueryHitsList Man page
SortedByQueryHitsList-class Man page
SortedByQuerySelfHits Man page
SortedByQuerySelfHits-class Man page
SortedByQuerySelfHitsList Man page
SortedByQuerySelfHitsList-class Man page
Summary,LLint-method Man page
Summary,Rle-method Man page
TransposedDataFrame Man page
TransposedDataFrame-class Man page
VH_recycle Source code
V_recycle Source code
Vector Man page
Vector-class Man page
Vector-comparison Man page
Vector-merge Man page
Vector-setops Man page
Vector_window Source code
[ Man page
[,DataFrame-method Man page
[,DataFrameFactor,ANY,ANY,ANY-method Man page
[,DataFrameFactor-method Man page
[,FilterMatrix-method Man page
[,FilterRules-method Man page
[,List-method Man page
[,Rle-method Man page
[,TransposedDataFrame-method Man page
[,Vector-method Man page
[<-,DataFrame-method Man page
[<-,List-method Man page
[<-,Rle,ANY-method Man page
[<-,TransposedDataFrame-method Man page
[<-,Vector-method Man page
[[,DFrame-method Man page
[[,DataFrame-method Man page Man page
[[,DataFrameFactor,ANY,ANY-method Man page
[[,DataFrameFactor-method Man page
[[,List-method Man page
[[<-,DFrame-method Man page
[[<-,FilterRules-method Man page
[[<-,List-method Man page
active Man page
active,FilterRules-method Man page
active<- Man page
active<-,FilterRules-method Man page
addSelfRef Source code
aggregate Man page
aggregate,List-method Man page
aggregate,Rle-method Man page
aggregate,Vector-method Man page
aggregate,data.frame-method Man page
aggregate,matrix-method Man page
aggregate,ts-method Man page
aggregate-methods Man page
aggregate.Vector Man page Source code
aggregateWithDots Source code
allEqualS4 Source code
anyDuplicated,NSBS-method Man page
anyDuplicated,RangeNSBS-method Man page
anyDuplicated,Rle-method Man page
anyDuplicated,RleNSBS-method Man page
anyDuplicated,Vector-method Man page
anyDuplicated.NSBS Man page Source code
anyDuplicated.Rle Man page Source code
anyDuplicated.Vector Man page Source code
anyMissing Source code
anyMissingOrOutside Source code
anyNA,Rle-method Man page
anyNA,Vector-method Man page
append Man page
append,Rle,vector-method Man page
append,Vector,Vector-method Man page
append,vector,Rle-method Man page
as.LLint Man page Source code
as.character,Factor-method Man page
as.character,LLint-method Man page
as.character,Vector-method Man page
as.character.LLint Man page Source code
as.complex,Vector-method Man page
as.data.frame,DataFrame-method Man page
as.data.frame,Hits-method Man page
as.data.frame,List-method Man page
as.data.frame,Pairs-method Man page
as.data.frame,Rle-method Man page
as.data.frame,Vector-method Man page
as.data.frame.DataFrame Man page Source code
as.data.frame.Hits Man page Source code
as.data.frame.Vector Man page Source code
as.double,Vector-method Man page
as.env Man page
as.env,NULL-method Man page
as.env,SimpleList-method Man page
as.env,Vector-method Man page
as.factor,Factor-method Man page
as.factor,Rle-method Man page
as.integer,Factor-method Man page
as.integer,LLint-method Man page
as.integer,NativeNSBS-method Man page
as.integer,RangeNSBS-method Man page
as.integer,RleNSBS-method Man page
as.integer,Vector-method Man page
as.integer.LLint Man page Source code
as.list,List-method Man page
as.list,Rle-method Man page
as.list,SimpleList-method Man page
as.list,TransposedDataFrame-method Man page
as.list,Vector-method Man page
as.list.Rle Man page Source code
as.list.SimpleList Man page Source code
as.list.TransposedDataFrame Man page Source code
as.list.Vector Man page Source code
as.logical,LLint-method Man page
as.logical,Vector-method Man page
as.logical.LLint Man page Source code
as.matrix,DataFrame-method Man page
as.matrix,Hits-method Man page
as.matrix,HitsList-method Man page
as.matrix,TransposedDataFrame-method Man page
as.matrix,Vector-method Man page
as.matrix.Vector Man page Source code
as.numeric,LLint-method Man page
as.numeric,Vector-method Man page
as.numeric.LLint Man page Source code
as.raw,Factor-method Man page
as.raw,Vector-method Man page
as.table,Hits-method Man page
as.table,HitsList-method Man page
as.vector,Rle-method Man page
as.vector.Rle Man page Source code
asFactorOrFactorRle Source code
atomic Man page
atomic-class Man page
bindCOLS Man page
bindCOLS,TransposedDataFrame-method Man page
bindROWS Man page
bindROWS,ANY-method Man page
bindROWS,DataFrame-method Man page
bindROWS,Factor-method Man page
bindROWS,Hits-method Man page
bindROWS,LLint-method Man page
bindROWS,NULL-method Man page
bindROWS,Rle-method Man page
bindROWS,TransposedDataFrame-method Man page
bindROWS,Vector-method Man page
bindROWS2 Source code
bindROWS_Vector_objects Source code
breakTies Man page Source code
c Man page
c,DataFrame-method Man page
c,LLint-method Man page
c,Vector-method Man page
canonical_replace_as Source code
canonical_replace_as_2 Source code
capitalize Source code
cbind,DataFrame-method Man page
cbind,FilterMatrix-method Man page
cbind,List-method Man page
cbind,RectangularData-method Man page
cbind.DataFrame Man page Source code
cbind.List Man page Source code
cbind.RectangularData Man page Source code
cbind_mcols_for_display Man page Source code
character_OR_NULL Man page
character_OR_NULL-class Man page
chartr,ANY,ANY,Rle-method Man page
class:DFrame Man page
class:DataFrame Man page
class:DataFrameFactor Man page
class:DataFrame_OR_NULL Man page
class:Factor Man page
class:FilterRules Man page
class:Hits Man page
class:HitsList Man page
class:LLint Man page
class:List Man page
class:NSBS Man page
class:Pairs Man page
class:RectangularData Man page
class:Rle Man page
class:SelfHits Man page
class:SelfHitsList Man page
class:SimpleList Man page
class:SortedByQueryHits Man page
class:SortedByQueryHitsList Man page
class:SortedByQuerySelfHits Man page
class:SortedByQuerySelfHitsList Man page
class:TransposedDataFrame Man page
class:Vector Man page
class:atomic Man page
class:character_OR_NULL Man page
class:expression_OR_function Man page
class:integer_OR_LLint Man page
class:integer_OR_raw Man page
class:list_OR_List Man page
class:vector_OR_Vector Man page
class:vector_OR_factor Man page
classNameForDisplay Man page
classNameForDisplay,ANY-method Man page
classNameForDisplay,DFrame-method Man page
classNameForDisplay,SimpleList-method Man page
classNameForDisplay,SortedByQueryHits-method Man page
classNamespace Source code
coerce,ANY,AsIs-method Man page
coerce,ANY,DFrame-method Man page
coerce,ANY,DataFrame-method Man page
coerce,ANY,DataFrame_OR_NULL-method Man page
coerce,ANY,FilterRules-method Man page
coerce,ANY,List-method Man page
coerce,ANY,Rle-method Man page
coerce,ANY,SimpleList-method Man page
coerce,ANY,TransposedDataFrame-method Man page
coerce,ANY,vector-method Man page
coerce,AsIs,DFrame-method Man page
coerce,DataFrame,TransposedDataFrame-method Man page
coerce,Hits,DFrame-method Man page
coerce,Hits,SelfHits-method Man page
coerce,Hits,SortedByQueryHits-method Man page
coerce,Hits,SortedByQuerySelfHits-method Man page
coerce,HitsList,SortedByQueryHitsList-method Man page
coerce,List,list-method Man page
coerce,NULL,DFrame-method Man page
coerce,Pairs,DFrame-method Man page
coerce,Rle,character-method Man page
coerce,Rle,complex-method Man page
coerce,Rle,factor-method Man page
coerce,Rle,integer-method Man page
coerce,Rle,list-method Man page
coerce,Rle,logical-method Man page
coerce,Rle,numeric-method Man page
coerce,Rle,raw-method Man page
coerce,Rle,vector-method Man page
coerce,SelfHits,SortedByQuerySelfHits-method Man page
coerce,SimpleList,DFrame-method Man page
coerce,SimpleList,DataFrame-method Man page
coerce,SimpleList,FilterRules-method Man page
coerce,SortedByQueryHits,SortedByQuerySelfHits-method Man page
coerce,SortedByQueryHitsList,HitsList-method Man page
coerce,TransposedDataFrame,DataFrame-method Man page
coerce,Vector,DFrame-method Man page
coerce,Vector,character-method Man page
coerce,Vector,complex-method Man page
coerce,Vector,data.frame-method Man page
coerce,Vector,double-method Man page
coerce,Vector,factor-method Man page
coerce,Vector,integer-method Man page
coerce,Vector,logical-method Man page
coerce,Vector,numeric-method Man page
coerce,Vector,raw-method Man page
coerce,Vector,vector-method Man page
coerce,character,LLint-method Man page
coerce,data.frame,DFrame-method Man page
coerce,data.table,DFrame-method Man page
coerce,factor,Factor-method Man page
coerce,function,FilterClosure-method Man page
coerce,integer,LLint-method Man page
coerce,integer,List-method Man page
coerce,list,DFrame-method Man page
coerce,list,List-method Man page
coerce,list_OR_List,Pairs-method Man page
coerce,logical,LLint-method Man page
coerce,numeric,LLint-method Man page
coerce,standardGeneric,FilterClosure-method Man page
coerce,table,DFrame-method Man page
coerce,vector_OR_Vector,Factor-method Man page
coerce,xtabs,DFrame-method Man page
coerceToSimpleList Source code
coercerToClass Source code
colnames,DataFrame-method Man page
colnames,TransposedDataFrame-method Man page
colnames<-,DataFrame-method Man page
combineCols Man page
combineCols,DataFrame-method Man page
combineRows Man page
combineRows,DataFrame-method Man page
combineUniqueCols Man page Source code
combine_mcols Source code
complete.cases,DataFrame-method Man page
compress_listData Source code
coolcat Man page Source code
cor,Rle,Rle-method Man page
countLnodeHits Man page
countLnodeHits,Hits-method Man page
countMatches Man page
countMatches,ANY,ANY-method Man page
countQueryHits Man page Source code
countRnodeHits Man page
countRnodeHits,Hits-method Man page
countSubjectHits Man page Source code
cov,Rle,Rle-method Man page
debugValidity Source code
decode Man page
decode,ANY-method Man page
decode,Rle-method Man page
decodeRle Source code
defaultIndices Source code
default_extractROWS Source code
default_mergeROWS Source code
default_replaceROWS Source code
delete_NULLs Source code
diff,Rle-method Man page
diff.Rle Man page Source code
diff.Vector Source code
diffWithInitialZero Source code
diffWithLast Source code
dim,DataFrameFactor-method Man page
dim,RectangularData-method Man page
dimnames,DataFrameFactor-method Man page
dimnames,RectangularData-method Man page
dimnames<-,DataFrame-method Man page
dimnames<-,RectangularData-method Man page
dimnames<-,TransposedDataFrame-method Man page
disableValidity Source code
drop_AsIs Source code
droplevels,DFrame-method Man page
droplevels,Factor-method Man page
droplevels,List-method Man page
droplevels,Rle-method Man page
droplevels.DFrame Source code
droplevels.Factor Man page Source code
droplevels.List Man page Source code
droplevels.Rle Man page Source code
duplicated,DataFrame-method Man page
duplicated,Rle-method Man page
duplicated,Vector-method Man page
duplicated.DataFrame Man page Source code
duplicated.Vector Man page Source code
duplicatedIntegerPairs Man page Source code
duplicatedIntegerQuads Man page Source code
elementMetadata Man page
elementMetadata,Vector-method Man page
elementMetadata<- Man page
elementMetadata<-,Vector-method Man page
elementNROWS Man page
elementNROWS,ANY-method Man page
elementNROWS,List-method Man page
elementType Man page
elementType,List-method Man page
elementType,vector-method Man page
end,Rle-method Man page
endoapply Man page Source code
ensureMcols Source code
errorIfWarning Source code
eval,FilterRules,ANY-method Man page
evalArg Source code
evalSeparately Man page
evalSeparately,FilterRules-method Man page
evalqForSelect Source code
evalqForSubset Source code
expand Man page
expand,DataFrame-method Man page
expand,Vector-method Man page
expand.grid Man page
expand.grid,Vector-method Man page
expandByColumnSet Source code
explodeIntBits Source code
expression_OR_function Man page
expression_OR_function-class Man page
extraArgsAsList Source code
extractCOLS Man page
extractCOLS,DataFrame-method Man page
extractCOLS,TransposedDataFrame-method Man page
extractROWS Man page
extractROWS,ANY,ANY-method Man page
extractROWS,DataFrame,ANY-method Man page
extractROWS,Rle,ANY-method Man page
extractROWS,Rle,NSBS-method Man page
extractROWS,Rle,RangeNSBS-method Man page
extractROWS,Rle,RleNSBS-method Man page
extractROWS,SortedByQueryHits,ANY-method Man page
extractROWS,TransposedDataFrame,ANY-method Man page
extractROWS,array,RangeNSBS-method Man page
extractROWS,data.frame,RangeNSBS-method Man page
extractROWS,vector_OR_factor,RangeNSBS-method Man page
extract_character_from_raw_by_positions Source code
extract_character_from_raw_by_ranges Source code
extract_data_frame_rows Source code
extract_positions_from_Rle Source code
extract_range_from_Rle Source code
extract_ranges_from_LLint Source code
extract_ranges_from_Rle Source code
extract_ranges_from_vector_OR_factor Source code
filterRules Man page
filterRules,FilterMatrix-method Man page
findIntervalAndStartFromWidth Source code
findMatches Man page
findMatches,ANY,ANY-method Man page
findMatches,ANY,missing-method Man page
findRun Man page
findRun,Rle-method Man page
first Man page
first,Pairs-method Man page
first<- Man page
first<-,Pairs-method Man page
fold Man page Source code
formulaAsListCall Source code
formulaValues Source code
from Man page
from,Hits-method Man page
getDefaultSlotValue Source code
getListElement Man page
getListElement,DataFrame-method Man page
getListElement,List-method Man page
getListElement,TransposedDataFrame-method Man page
getListElement,list-method Man page
getStartEndRunAndOffset Source code
get_showHeadLines Man page Source code
get_showTailLines Man page Source code
groupsum Source code
gsub,ANY,ANY,Rle-method Man page
hasNonDefaultMethod Source code
hasS3Method Source code
head Man page
head,RectangularData-method Man page
head,Vector-method Man page
head.LLint Source code
head.RectangularData Man page
head.Vector Man page Source code
head_along_ROWS Source code
horizontal_slot_names Man page
horizontal_slot_names,DFrame-method Man page
implodeIntBits Source code
intbitsAND Source code
intbitsNOT Source code
intbitsOR Source code
integer_OR_LLint Man page
integer_OR_LLint-class Man page
integer_OR_raw Man page
integer_OR_raw-class Man page
intersect,ANY,Rle-method Man page
intersect,Rle,ANY-method Man page
intersect,Rle,Rle-method Man page
intersect,Vector,Vector-method Man page
intersect.Vector Man page Source code
is.LLint Man page Source code
is.finite,Rle-method Man page
is.na,DataFrame-method Man page
is.na,LLint-method Man page
is.na,Rle-method Man page
is.na,Vector-method Man page
is.unsorted,Rle-method Man page
isConstant Man page
isConstant,array-method Man page
isConstant,integer-method Man page
isConstant,numeric-method Man page
isEmpty Man page
isEmpty,ANY-method Man page
isEmpty,List-method Man page
isNumericOrNAs Source code
isRecursive Source code
isRedundantHit Man page Source code
isSelfHit Man page Source code
isSequence Man page Source code
isSingleInteger Man page Source code
isSingleNumber Man page Source code
isSingleNumberOrNA Man page Source code
isSingleString Man page Source code
isSingleStringOrNA Man page Source code
isSorted Man page
isSorted,ANY-method Man page
isStrictlySorted Man page
isStrictlySorted,ANY-method Man page
isStrictlySorted,NSBS-method Man page
isStrictlySorted,RangeNSBS-method Man page
isStrictlySorted,Rle-method Man page
isStrictlySorted,RleNSBS-method Man page
isTRUEorFALSE Man page Source code
labeledLine Source code
lapply,List-method Man page
lapply,SimpleList-method Man page
last_or Source code
length,DataFrame-method Man page
length,LLint-method Man page
length,NSBS-method Man page
length,RangeNSBS-method Man page
length,Rle-method Man page
length,RleNSBS-method Man page
length,TransposedDataFrame-method Man page
length,Vector-method Man page
lengths,Vector-method Man page
levels Man page
levels,Rle-method Man page
levels.Rle Man page Source code
levels<- Man page
levels<-,Factor-method Man page
levels<-,Rle-method Man page
listClassName Source code
list_OR_List Man page
list_OR_List-class Man page
lowestListElementClass Source code
lsubset_List_by_List Source code
mad,Rle-method Man page
mad.Rle Man page
makeAllGroupInnerHits Source code
makeAllGroupInnerHits.old Source code
makeClassinfoRowForCompactPrinting Man page Source code
makeEnvForNames Source code
makeFixedColumnEnv Source code
makeGlobalWarningEnv Source code
makeNakedCharacterMatrixForDisplay Man page
makeNakedCharacterMatrixForDisplay,ANY-method Man page
makeNakedCharacterMatrixForDisplay,DataFrame-method Man page
makeNakedCharacterMatrixForDisplay,Hits-method Man page
makeNakedCharacterMatrixForDisplay,Pairs-method Man page
makeNakedCharacterMatrixForDisplay,TransposedDataFrame-method Man page
makePowersOfTwo Source code
makePrettyMatrixForCompactPrinting Man page Source code
make_NA_LLint_ Source code
make_XYZxyz_to_XxYyZz_subscript Source code
make_class_info_for_DataFrame_display Source code
make_rownames_for_RectangularData_display Source code
make_zero_col_DFrame Man page Source code
map_inner_ROWS_to_list_elements Source code
map_positions_to_runs Source code
map_ranges_to_runs Source code
match Man page
match,ANY,Rle-method Man page
match,DataFrame,DataFrame-method Man page
match,Factor,Factor-method Man page
match,Factor,Vector-method Man page
match,Hits,Hits-method Man page
match,Pairs,Pairs-method Man page
match,Rle,ANY-method Man page
match,Rle,Rle-method Man page
match,Vector,Factor-method Man page
match,Vector,Vector-method Man page
matchIntegerPairs Man page Source code
matchIntegerQuads Man page Source code
max,NSBS-method Man page
max,RangeNSBS-method Man page
mcols Man page
mcols,Vector-method Man page
mcols<- Man page
mcols<-,Vector-method Man page
mean,Rle-method Man page
mean.Rle Man page Source code
median,Rle-method Man page
median.Rle Man page Source code
mendoapply Man page Source code
merge Man page
merge,DataFrame,DataFrame-method Man page
merge,DataFrame,data.frame-method Man page
merge,Vector,Vector-method Man page
merge,data.frame,DataFrame-method Man page
mergeROWS Man page
mergeROWS,ANY,ANY-method Man page
mergeROWS,DFrame-method Man page
mergeROWS,Vector,ANY-method Man page
metadata Man page
metadata,Annotated-method Man page
metadata<- Man page
metadata<-,Annotated-method Man page
missingArg Source code
mstack Man page
mstack,DataFrame-method Man page
mstack,Vector-method Man page
mstack,vector-method Man page
nLnode Man page
nLnode,Hits-method Man page
nRnode Man page
nRnode,Hits-method Man page
na.exclude,DataFrame-method Man page
na.omit,DataFrame-method Man page
names,DataFrame-method Man page
names,Factor-method Man page
names,Pairs-method Man page
names,SimpleList-method Man page
names,TransposedDataFrame-method Man page
names<-,Factor-method Man page
names<-,Pairs-method Man page
names<-,SimpleList-method Man page
names<-,TransposedDataFrame-method Man page
nchar,Rle-method Man page
ncol,DataFrame-method Man page
ncol,TransposedDataFrame-method Man page
new2 Man page Source code
new_DataFrame Source code
new_Hits Source code
new_Rle Source code
new_SimpleList_from_list Source code
nlevels Man page
nlevels,Factor-method Man page
nnode Man page
nnode,SelfHits-method Man page
normSubsetIndex Source code
normalizeDoubleBracketSubscript Man page Source code
normalizeSingleBracketReplacementValue Man page
normalizeSingleBracketReplacementValue,ANY-method Man page
normalizeSingleBracketReplacementValue,TransposedDataFrame-metho Man page
normalizeSingleBracketSubscript Man page Source code
normargRunK Source code
normargSingleEndOrNA Source code
normargSingleStartOrNA Source code
normargUseNames Source code
normarg_mcols Source code
normarg_method Source code
normarg_names Source code
nrow,DataFrame-method Man page
nrow,TransposedDataFrame-method Man page
nrun Man page
nrun,Rle-method Man page
numeric2integer Source code
order,DataFrame-method Man page
order,Hits-method Man page
order,Pairs-method Man page
order,Rle-method Man page
orderBy Source code
orderIntegerPairs Man page Source code
orderIntegerQuads Man page Source code
parallelVectorNames Man page
parallelVectorNames,ANY-method Man page
parallelVectorNames,List-method Man page
parallel_slot_names Man page
parallel_slot_names,Factor-method Man page
parallel_slot_names,FilterRules-method Man page
parallel_slot_names,Hits-method Man page
parallel_slot_names,Pairs-method Man page
parallel_slot_names,SimpleList-method Man page
parallel_slot_names,Vector-method Man page
params Man page
params,FilterClosure-method Man page
paste,Rle-method Man page
pc Man page Source code
pcompare Man page
pcompare,ANY,ANY-method Man page
pcompare,DataFrame,DataFrame-method Man page
pcompare,Factor,Factor-method Man page
pcompare,Factor,Vector-method Man page
pcompare,Hits,Hits-method Man page
pcompare,Pairs,Pairs-method Man page
pcompare,Vector,Factor-method Man page
pcompare,numeric,numeric-method Man page
pcompareIntegerPairs Source code
pmax,Rle-method Man page
pmax.int,Rle-method Man page
pmin,Rle-method Man page
pmin.int,Rle-method Man page
prepare_objects_to_bind Source code
printAtomicVectorInAGrid Man page Source code
quantile,Rle-method Man page
quantile.Rle Man page Source code
queryHits Man page Source code
queryHits,HitsList-method Man page
queryLength Man page Source code
quick_togroup Source code
quick_unlist Source code
quick_unsplit Source code
rank,Rle-method Man page
rank,Vector-method Man page
rbind,FilterMatrix-method Man page
rbind,List-method Man page
rbind,RectangularData-method Man page
rbind.RectangularData Man page Source code
recycleArg Man page Source code
recycleCharacterArg Man page Source code
recycleIntegerArg Man page Source code
recycleLogicalArg Man page Source code
recycleNumericArg Man page Source code
recycleSingleBracketReplacementValue Source code
recycleVector Source code
relistToClass Man page
relistToClass,ANY-method Man page
relistToClass,DataFrame-method Man page
relistToClass,Hits-method Man page
relistToClass,SortedByQueryHits-method Man page
relistToClass,data.frame-method Man page
remapHits Man page Source code
rename Man page
rename,Vector-method Man page
rename,vector-method Man page
rep Man page
rep,DataFrame-method Man page
rep,Rle-method Man page
rep,Vector-method Man page
rep.int Man page
rep.int,Rle-method Man page
rep.int,Vector-method Man page
rep.int_along_ROWS Source code
repROWS Source code
replaceCOLS Man page
replaceCOLS,DFrame-method Man page
replaceROWS Man page
replaceROWS,ANY,ANY-method Man page
replaceROWS,DFrame-method Man page
replaceROWS,Rle,ANY-method Man page
replaceROWS,Vector,ANY-method Man page
rev Man page
rev,Rle-method Man page
rev,Vector-method Man page
rev.Rle Man page Source code
rev.Vector Man page
revElements Man page
revElements,List-method Man page
revElements,list-method Man page
revROWS Source code
reverseIntegerInjection Source code
reverseSelfmatchMapping Source code
revmap_Hits Source code
rownames,DataFrame-method Man page
rownames,TransposedDataFrame-method Man page
rownames<-,DFrame-method Man page
runEndsOfIntegerPairs Source code
runLength Man page
runLength,Rle-method Man page
runLength<- Man page
runLength<-,Rle-method Man page
runValue Man page
runValue,Rle-method Man page
runValue<- Man page
runValue<-,Rle-method Man page
runmean Man page
runmean,Rle-method Man page
runmed,Rle-method Man page
runq Man page
runq,Rle-method Man page
runsum Man page
runsum,Rle-method Man page
runwtsum Man page
runwtsum,Rle-method Man page
safeEval Source code
safeExplode Man page Source code
sameAsPreviousROW Man page
sameAsPreviousROW,ANY-method Man page
sameAsPreviousROW,DataFrame-method Man page
sameAsPreviousROW,Pairs-method Man page
sapply,List-method Man page
sapply_NROW Source code
sapply_isNULL Source code
sd,Rle-method Man page
second Man page
second,Pairs-method Man page
second<- Man page
second<-,Pairs-method Man page
selectHits Man page Source code
selectSome Source code
selfmatch Man page
selfmatch,ANY-method Man page
selfmatch,Factor-method Man page
selfmatch,Vector-method Man page
selfmatch,factor-method Man page
selfmatchIntegerPairs Man page Source code
selfmatchIntegerQuads Man page Source code
setDefaultSlotValue Source code
setListElement Man page
setListElement,List-method Man page
setListElement,list-method Man page
setListElement_default Source code
setMethods Man page Source code
setPrototypeFromObject Source code
setReplaceAs Source code
setValidity2 Man page Source code
set_showHeadLines Man page Source code
set_showTailLines Man page Source code
set_unlisted_names Source code
setdiff,ANY,Rle-method Man page
setdiff,Rle,ANY-method Man page
setdiff,Rle,Rle-method Man page
setdiff,Vector,Vector-method Man page
setdiff.Vector Man page Source code
setequal,Vector,Vector-method Man page
setequal.Vector Man page Source code
shiftApply Man page
shiftApply,Vector,Vector-method Man page
shiftApply,vector,vector-method Man page
shiftApply-methods Man page
show,DataFrame-method Man page
show,DataFrameFactor-method Man page
show,Factor-method Man page
show,FilterClosure-method Man page
show,FilterMatrix-method Man page
show,Hits-method Man page
show,LLint-method Man page
show,List-method Man page
show,Pairs-method Man page
show,RangeNSBS-method Man page
show,Rle-method Man page
show,TransposedDataFrame-method Man page
show-utils Man page
showAsCell Man page
showAsCell,ANY-method Man page
showAsCell,AsIs-method Man page
showAsCell,DataFrame-method Man page
showAsCell,Factor-method Man page
showAsCell,LLint-method Man page
showAsCell,List-method Man page
showAsCell,character-method Man page
showAsCell,data.frame-method Man page
showAsCell,list-method Man page
showAsCell,numeric-method Man page
showAsCell_array Source code
showAsCell_list Source code
showHeadLines Man page
showPairs Source code
showTailLines Man page
simplify_NULL_dimnames Source code
sketchStr Source code
smoothEnds,Rle-method Man page
sort,DataFrame-method Man page
sort,Rle-method Man page
sort,SortedByQueryHits-method Man page
sort,Vector-method Man page
sort.DataFrame Man page
sort.List Source code
sort.Rle Man page Source code
sort.Vector Man page Source code
sortedIntegerPairs Source code
sortedIntegerQuads Source code
sortedMerge Source code
space Man page
space,HitsList-method Man page
split Man page
split,ANY,Vector-method Man page
split,Vector,ANY-method Man page
split,Vector,Vector-method Man page
split,list,Vector-method Man page
splitAsList Man page
splitAsList,ANY,ANY-method Man page
splitAsList,SortedByQueryHits,ANY-method Man page
stack,List-method Man page
stack,matrix-method Man page
stack-methods Man page
stack_index Source code
start,Rle-method Man page
sub,ANY,ANY,Rle-method Man page
subjectHits Man page Source code
subjectHits,HitsList-method Man page
subjectLength Man page Source code
subset Man page
subset,RectangularData-method Man page
subset,Vector-method Man page
subset.Vector Man page Source code
subsetByFilter Man page
subsetByFilter,ANY,FilterRules-method Man page
subset_List_by_List Source code
subset_Vector Source code
subset_along_ROWS Source code
subsetting-utils Man page
substr,Rle-method Man page
substring,Rle-method Man page
summary,FilterMatrix-method Man page
summary,FilterRules-method Man page
summary,Hits-method Man page
summary,Rle-method Man page
summary,Vector-method Man page
summary.Hits Man page Source code
summary.Rle Man page Source code
summary.Vector Man page Source code
svn.time Man page Source code
t,DataFrame-method Man page
t,Hits-method Man page
t,HitsList-method Man page
t,TransposedDataFrame-method Man page
t.DataFrame Man page Source code
t.Hits Man page Source code
t.HitsList Source code
t.TransposedDataFrame Man page Source code
table,Rle-method Man page
table,Vector-method Man page
tabulate,Rle-method Man page
tabulate2 Source code
tail Man page
tail,RectangularData-method Man page
tail,Vector-method Man page
tail.LLint Source code
tail.RectangularData Man page
tail.Vector Man page Source code
tail_along_ROWS Source code
to Man page
to,Hits-method Man page
toListOfIntegerVectors Man page Source code
toNumSnippet Source code
tolower,Rle-method Man page
top_prenv Source code
top_prenv_dots Source code
toupper,Rle-method Man page
transform,DataFrame-method Man page
transform,Vector-method Man page
transform.DataFrame Man page
transform.Vector Man page
transformColumns Source code
unfactor Man page
unfactor,Factor-method Man page
unfactor,factor-method Man page
union,ANY,Rle-method Man page
union,Rle,ANY-method Man page
union,Rle,Rle-method Man page
union,SortedByQueryHits,Hits-method Man page
union,Vector,Vector-method Man page
union.Vector Man page Source code
unique,DataFrame-method Man page
unique,Rle-method Man page
unique,Vector-method Man page
unique.DataFrame Man page
unique.Vector Man page Source code
unlist,List-method Man page
unname,Vector-method Man page
unstrsplit Man page
unstrsplit,character-method Man page
unstrsplit,list-method Man page
updateObject,DataFrame-method Man page
updateObject,Hits-method Man page
updateObject,SimpleList-method Man page
updateObject,Vector-method Man page
values Man page
values,Vector-method Man page
values<- Man page
values<-,Vector-method Man page
var,Rle,Rle-method Man page
var,Rle,missing-method Man page
vector_OR_Vector Man page
vector_OR_Vector-class Man page
vector_OR_factor Man page
vector_OR_factor-class Man page
vertical_slot_names Man page
vertical_slot_names,DFrame-method Man page
which,Rle-method Man page
which.max,Rle-method Man page
width,Rle-method Man page
window Man page
window,Vector-method Man page
window.LLint Source code
window.Vector Man page Source code
window_along_ROWS Source code
within,List-method Man page
wmsg Man page Source code
wmsg2 Source code
xtabs,DataFrame-method Man page
xtfrm,Factor-method Man page
xtfrm,Rle-method Man page
xtfrm,Vector-method Man page
zipdown Man page
zipdown,ANY-method Man page
zipdown,List-method Man page
zipup Man page
zipup,ANY,ANY-method Man page
zipup,Pairs,missing-method Man page
Bioconductor/S4Vectors documentation built on Nov. 17, 2024, 6:55 p.m.

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