getManifest: Get a Manifest from GDCquery output that can be used with...

In BioinformaticsFMRP/TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Get a Manifest from GDCquery output that can be used with GDC-client

Description

Get a Manifest from GDCquery output that can be used with GDC-client

Usage

getManifest(query, save = FALSE)

Arguments

query	A query for GDCquery function
save	Write Manifest to a txt file (tab separated)

Examples

query <- GDCquery(
  project = "TARGET-AML",
  data.category = "Transcriptome Profiling",
  data.type = "Gene Expression Quantification",
  workflow.type = "STAR - Counts",
  barcode = c("TARGET-20-PADZCG-04A-01R", "TARGET-20-PARJCR-09A-01R")
)
getManifest(query)

BioinformaticsFMRP/TCGAbiolinks documentation built on April 12, 2024, 2:08 a.m.