matchedMetExp: Get GDC primary tumors samples with both DNA methylation...

In BioinformaticsFMRP/TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Get GDC primary tumors samples with both DNA methylation (HM450K) and Gene expression data

Description

For a given TCGA project it gets the primary tumors samples (barcode) with both DNA methylation and Gene expression data from GDC database

Usage

matchedMetExp(project, n = NULL)

Arguments

project	A GDC project
n	Number of samples to return. If NULL return all (default)

Value

A vector of barcodes

Examples

# Get ACC samples with both  DNA methylation (HM450K) and gene expression aligned to hg19
samples <- matchedMetExp("TCGA-UCS")

BioinformaticsFMRP/TCGAbiolinks documentation built on April 12, 2024, 2:08 a.m.