getSampleFilesSummary: Retrieve summary of files per sample in a project

In BioinformaticsFMRP/TCGAbiolinks: TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Retrieve summary of files per sample in a project

Description

Retrieve the numner of files under each data_category + data_type + experimental_strategy + platform Almost like https://portal.gdc.cancer.gov/exploration

Usage

getSampleFilesSummary(project, files.access = NA)

Arguments

project	A GDC project
files.access	Filter by file access ("open" or "controlled"). Default: no filter

Value

A data frame with the maf file information

Author(s)

Tiago Chedraoui Silva

Examples

   summary <- getSampleFilesSummary("TCGA-UCS")
## Not run: 
   summary <- getSampleFilesSummary(c("TCGA-OV","TCGA-ACC"))

## End(Not run)

BioinformaticsFMRP/TCGAbiolinks documentation built on April 12, 2024, 2:08 a.m.