View source: R/getUniqueTopologies.R
getUniqueTopologies | R Documentation |
This function takes a multiPhylo where all trees share 3 or more taxa, and returns the unique topologies after pruning to a common set of taxa
getUniqueTopologies(trees, tree_names, print_table, return_table)
trees |
Rooted multiPhylo object where all trees share at least three taxa |
print_table |
OPTIONAL: If TRUE, return trees, and print summary table |
return_table |
OPTIONAL: If TRUE, return summary table rather than multiPhylo |
tree_names: |
OPTIONAL: If TRUE, name unique trees based off of individual tree names [Default: FALSE, return trees named Topology_1, Topology_2, etc.] |
multiPhylo containing unique topologies, or a phylo if all all trees share a common topology
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