isCladeSupport: Rboretum Clade Support Checker

In BobLiterman/Rboretum: Compare Phylogenetic Trees and Alignment Support Values

Rboretum Clade Support Checker

Description

This function returns TRUE if all the clades in 'tree' are present in the clade comparsion output from getTreeClades(return_counts=TRUE); otherwise, FALSE

Usage

isCladeSupport(test_object, tree, partial)

Arguments

test_object	R object to check
tree	Check that passed support object contains information about a specific set of trees. Options include: A rooted phylo object; or, A named, rooted multiPhylo object where all trees share 3+ taxa
partial	OPTIONAL: If TRUE, as long as all clades from 'tree' are present, return TRUE [Default: FALSE, require that 'tree' also includes all clades in support object]

Value

TRUE if output of getTreeClades(tree,return_count=TRUE); otherwise, FALSE

BobLiterman/Rboretum documentation built on July 6, 2023, 7:46 p.m.