isAlignmentSupport: Rboretum Alignment Support Checker

In BobLiterman/Rboretum: Compare Phylogenetic Trees and Alignment Support Values

Rboretum Alignment Support Checker

Description

This function returns TRUE if the passed object is the output of getAlignmentSupport() and contains information about clades in 'test_clade'; otherwise, FALSE

Usage

isAlignmentSupport(test_object, test_clade, partial)

Arguments

test_object	R object to check
test_clade	Source for clades to check. Function checks that passed support object contains information about these clades. Options include: Rooted phylo or multiPhylo object vector of semicolon-separated clades.
partial	OPTIONAL: If TRUE, as long as all clades from 'test_clade' are present, return TRUE [Default: FALSE, require that test_clades also includes all clades in support object]

Value

TRUE if output of getAlignmentSupport() with information on 'test_clade'; otherwise, FALSE

BobLiterman/Rboretum documentation built on July 6, 2023, 7:46 p.m.