barChart: Produces bar charts.
In Bohdan-Khomtchouk/geneXtendeR_keepme: Optimized Functional Annotation Of ChIP-seq Data
Description
Usage
Arguments
Value
Examples
Description
Makes bar graphs showing the number of genes under peaks at various upstream extension levels.
Usage
1
Arguments
organism
Object name assigned from readGFF() command.
start
Lower bound of upstream extension.
end
Upper bound of upstream extension.
by
Interval between consecutive extensions.
Value
Creates bar charts.
Examples
1
2
3
4
5
library(rtracklayer)
rat <- readGFF("ftp://ftp.ensembl.org/pub/release-84/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_6.0.84.gtf.gz")
fpath <- system.file("extdata", "somepeaksfile.txt", package="geneXtendeR")
peaksInput(fpath)
barChart(rat, 1000, 3000, 100)
Bohdan-Khomtchouk/geneXtendeR_keepme documentation built on June 3, 2019, 10:09 p.m.
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Description Usage Arguments Value Examples
Description
Makes bar graphs showing the number of genes under peaks at various upstream extension levels.
Usage
1 |
Arguments
organism |
Object name assigned from readGFF() command. |
start |
Lower bound of upstream extension. |
end |
Upper bound of upstream extension. |
by |
Interval between consecutive extensions. |
Value
Creates bar charts.
Examples
1 2 3 4 5 | library(rtracklayer)
rat <- readGFF("ftp://ftp.ensembl.org/pub/release-84/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_6.0.84.gtf.gz")
fpath <- system.file("extdata", "somepeaksfile.txt", package="geneXtendeR")
peaksInput(fpath)
barChart(rat, 1000, 3000, 100)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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